RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ASGR2P07307 311 aa13.47□□□□□ -0.25
PTPRA-201ENST00000216877 AKAIN1P0CW23 69 aa13.47□□□□□ -0.25
PTPRA-201ENST00000216877 SGSHP51688 502 aa13.47□□□□□ -0.25
PTPRA-201ENST00000216877 PCBP4P57723 403 aaKnown RBP13.47□□□□□ -0.25
PTPRA-201ENST00000216877 CLDN2P57739 230 aa13.47□□□□□ -0.25
PTPRA-201ENST00000216877 DCDP81605 110 aaKnown RBP13.47□□□□□ -0.25
PTPRA-201ENST00000216877 HENMT1Q5T8I9 393 aaKnown RBP13.47□□□□□ -0.25
PTPRA-201ENST00000216877 TRAPPC5Q8IUR0 188 aa13.47□□□□□ -0.25
PTPRA-201ENST00000216877 CKMP06732 381 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 ACKR3P25106 362 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 HTR5AP47898 357 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 FXYD6P3P58550 94 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 INPP5JQ15735 1006 aaPredicted RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 MRM1Q6IN84 353 aaKnown RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 GDPD4Q6W3E5 623 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 DMBX1Q8NFW5 382 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 DOK4Q8TEW6 326 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 COL26A1Q96A83 441 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 MYADMQ96S97 322 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 SOX7Q9BT81 388 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 GPR61Q9BZJ8 451 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 MMP26Q9NRE1 261 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 FOXJ3Q9UPW0 622 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 CSAG2Q9Y5P2 127 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 ZNF28P17035 718 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 TEAD1P28347 426 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 CD1CP29017 333 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 SNRPNP63162 240 aaKnown RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 EIF4EBP2Q13542 120 aaPredicted RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 CRMP1Q14194 572 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 NIPAL3Q6P499 406 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 RNF165Q6ZSG1 346 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 KDF1Q8NAX2 398 aaPredicted RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 SDR9C7Q8NEX9 313 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 FOXRED1Q96CU9 486 aaPredicted RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 CD180Q99467 661 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.46□□□□□ -0.256e-7■□□□□ 10.8
PTPRA-201ENST00000216877 KCNK15Q9H427 330 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 TNFSF18Q9UNG2 199 aa13.46□□□□□ -0.25
PTPRA-201ENST00000216877 GPR55Q9Y2T6 319 aaPredicted RBP13.46□□□□□ -0.25
PTPRA-201ENST00000216877 TMEM202A6NGA9 273 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 EIF4E2O60573 245 aaKnown RBP13.46□□□□□ -0.26
PTPRA-201ENST00000216877 CLDN11O75508 207 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 CR2P20023 1033 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 GSK3AP49840 483 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 EPHB3P54753 998 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 POM121L1PQ3SYA9 428 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 STEAP1BQ6NZ63 245 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 FAM199XQ6PEV8 388 aaPredicted RBP13.46□□□□□ -0.26
PTPRA-201ENST00000216877 LCTLQ6UWM7 567 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 OR4K17Q8NGC6 315 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 OR9A2Q8NGT5 310 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 SMIM3Q9BZL3 60 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 RAB33BQ9H082 229 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 TCEAL2Q9H3H9 227 aaPredicted RBP13.46□□□□□ -0.26
PTPRA-201ENST00000216877 LHX9Q9NQ69 397 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 OR5V1Q9UGF6 321 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 ZDHHC8Q9ULC8 765 aa13.46□□□□□ -0.26
PTPRA-201ENST00000216877 EXOGQ9Y2C4 368 aaKnown RBP13.46□□□□□ -0.26
PTPRA-201ENST00000216877 A0A087WV62 115 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SMIM35A0A1B0GVV1 85 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 CDC42EP2O14613 210 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SBK2P0C263 348 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 F3P13726 295 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 LTBQ06643 244 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 EBPQ15125 230 aaKnown RBP13.45□□□□□ -0.26
PTPRA-201ENST00000216877 C9orf64Q5T6V5 341 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SLC36A1Q7Z2H8 476 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SLC35F3Q8IY50 421 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 ARL6IP6Q8N6S5 226 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 KIRREL1Q96J84 757 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 INSM2Q96T92 566 aaPredicted RBP13.45□□□□□ -0.26
PTPRA-201ENST00000216877 OCSTAMPQ9BR26 566 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 IGLV3-10A0A075B6K4 115 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 TRAV27A0A087WT01 109 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 MED19A0JLT2 244 aaPredicted RBP13.45□□□□□ -0.26
PTPRA-201ENST00000216877 TMEM235A6NFC5 223 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SLC22A31A6NKX4 558 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 CLDN4O14493 209 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 PPP1R2P9O14990 202 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 DUSP11O75319 330 aaKnown RBP13.45□□□□□ -0.26
PTPRA-201ENST00000216877 LSSP48449 732 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 PNLIPRP1P54315 467 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 S100A10P60903 97 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 ZNF805Q5CZA5 627 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 OR51D1Q8NGF3 324 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 OR5AP2Q8NGF4 316 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 NRSN2Q9GZP1 204 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 RHBGQ9H310 441 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SEC61A2Q9H9S3 476 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 SLC7A7Q9UM01 511 aa13.45□□□□□ -0.26
PTPRA-201ENST00000216877 LRP3O75074 770 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 OR13C7P0DN81 318 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 PRSS3P35030 304 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 NCBP2P52298 156 aaKnown RBP eCLIP13.44□□□□□ -0.26
PTPRA-201ENST00000216877 SIRPAP78324 504 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 LYPLAL1Q5VWZ2 237 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 FAM71E1Q6IPT2 247 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 DHRS11Q6UWP2 260 aa13.44□□□□□ -0.26
PTPRA-201ENST00000216877 ZNF761Q86XN6 746 aaPredicted RBP13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms