RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TMEM183BQ1AE95 376 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 KRTAP6-3Q3LI67 103 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 USH1GQ495M9 461 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 SLC36A3Q495N2 470 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 KCTD21Q4G0X4 260 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 GPRC6AQ5T6X5 926 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 PMF1Q6P1K2 205 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CBLN3Q6UW01 205 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CDH26Q8IXH8 852 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CCDC65Q8IXS2 484 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 TMEM183AQ8IXX5 376 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 BBS5Q8N3I7 341 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 STXBP6Q8NFX7 210 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 OR51G2Q8NGK0 314 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 RPL3LQ92901 407 aaKnown RBP1.8□□□□□ -2.12
CD44-239ENST00000639002 CCNL2Q96S94 520 aaPredicted RBP1.8□□□□□ -2.12
CD44-239ENST00000639002 OSBPL11Q9BXB4 747 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CAPS2Q9BXY5 557 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 PKIBQ9C010 78 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 POLR1EQ9GZS1 481 aaKnown RBP1.8□□□□□ -2.12
CD44-239ENST00000639002 YY1AP1Q9H869 796 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 GGA2Q9UJY4 613 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 CFAP45Q9UL16 551 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 TRAF3IP3Q9Y228 551 aa1.8□□□□□ -2.12
CD44-239ENST00000639002 IGLV11-55A0A075B6I3 123 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 XKRY2A2RUG3 117 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 PCP4L1A6NKN8 68 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 NPIPA7E9PJI5 369 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 H0YIV9 168 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 CD5LO43866 347 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 TBX19O60806 448 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 ERLIN1O75477 346 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 SUPT3HO75486 399 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 TLX1NBP0CAT3 122 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 HSMCR30P0CW71 290 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 NPIPA8P0DM63 369 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 CXCR2P25025 360 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 RDXP35241 583 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 DLX1P56177 255 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 BEX3Q00994 111 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 DMTNQ08495 405 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 IL24Q13007 206 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 SYCP1Q15431 976 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 NADK2Q4G0N4 442 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 CAVIN4Q5BKX8 364 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 NCR3LG1Q68D85 454 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 KCNIP4Q6PIL6 250 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 BRD3OSQ6XYD6 125 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 KIAA1328Q86T90 577 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 LRP11Q86VZ4 500 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 TPRA1Q86W33 373 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 ZCCHC7Q8N3Z6 543 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 FAM86B1Q8N7N1 296 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 ATP6V0D2Q8N8Y2 350 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 FADS6Q8N9I5 356 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 EIF1ADQ8N9N8 165 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 CCDC148Q8NFR7 591 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 OR10G3Q8NGC4 313 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 OR10A7Q8NGE5 316 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 OR52K1Q8NGK4 314 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 OR52M1Q8NGK5 317 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 FANK1Q8TC84 345 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 SPRYD4Q8WW59 207 aaPredicted RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 MRPS31Q92665 395 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 ANP32BQ92688 251 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 ASB9Q96DX5 294 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 SH3YL1Q96HL8 342 aaPredicted RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 SLC6A7Q99884 636 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 CCDC77Q9BR77 488 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 MRPL13Q9BYD1 178 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 TMEM117Q9H0C3 514 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 STMN4Q9H169 189 aaPredicted RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 VCX2Q9H322 139 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 SMYD3Q9H7B4 428 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 RMND5AQ9H871 391 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 GORASP2Q9H8Y8 452 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 FANCEQ9HB96 536 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 DDX18Q9NVP1 670 aaKnown RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 RAB20Q9NX57 234 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 GNG12Q9UBI6 72 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 ZNF629Q9UEG4 869 aaPredicted RBP1.79□□□□□ -2.12
CD44-239ENST00000639002 NPIPA1Q9UND3 350 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 B9D1Q9UPM9 204 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 KDRP35968 1356 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 PIK3R4Q99570 1358 aa1.79□□□□□ -2.12
CD44-239ENST00000639002 NSD2O96028 1365 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 KANK1Q14678 1352 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 SF3B1O75533 1304 aaKnown RBP eCLIP1.78□□□□□ -2.12
CD44-239ENST00000639002 FRMPD4Q14CM0 1322 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 IGHV1OR21-1A0A087WYE8 117 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 A0A1W2PNV4 684 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 CXCL11O14625 94 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 PRRG1O14668 218 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 POLR3GO15318 223 aaPredicted RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 MSH4O15457 936 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 OR1F1O43749 312 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 ENTPD5O75356 428 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 BCAS1O75363 584 aaPredicted RBP1.78□□□□□ -2.12
CD44-239ENST00000639002 SPAG6O75602 509 aa1.78□□□□□ -2.12
CD44-239ENST00000639002 UGT2B4P06133 528 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms