RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HIF3AQ9Y2N7 669 aa5.32□□□□□ -1.56
SCN1A-216ENST00000637968 MRPS18CQ9Y3D5 142 aaKnown RBP5.32□□□□□ -1.56
SCN1A-216ENST00000637968 COL14A1Q05707 1796 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 FER1L6Q2WGJ9 1857 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 A0A0U1RQF3 1178 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CYC1P08574 325 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ACP2P11117 423 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 LAMP1P11279 417 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CD1DP15813 335 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SDHBP21912 280 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF41P51814 821 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 RGS8P57771 180 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 UBE2MP61081 183 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 NFATC4Q14934 902 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 OR7A5Q15622 319 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 TMEM183BQ1AE95 376 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 LINC00303Q3SY05 128 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 UBE2NLQ5JXB2 153 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 TECPR1Q7Z6L1 1165 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 NKAIN3Q8N8D7 197 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 HJURPQ8NCD3 748 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PIGXQ8TBF5 258 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 RNASE8Q8TDE3 154 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ACER1Q8TDN7 264 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 THEM6Q8WUY1 208 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SEC22AQ96IW7 307 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SGCZQ96LD1 299 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CDK15Q96Q40 435 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SLC6A7Q99884 636 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 MESP1Q9BRJ9 268 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 FAAP24Q9BTP7 215 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 NDC1Q9BTX1 674 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 EGLN1Q9GZT9 426 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PIPOXQ9P0Z9 390 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 COL1A1P02452 1464 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PTPRFP10586 1907 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 BORCS7-ASMTA0A0B4J1R7 106 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 MGAT4DA6NG13 374 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZAR1LA6NP61 321 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 C9J4A7 227 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PPIHO43447 177 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 AIFM1O95831 613 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ACTL6AO96019 429 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 F13BP05160 661 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SNRPBP14678 240 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 IDSP22304 550 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CEACAM6P40199 344 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CASRP41180 1078 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 WNT5AP41221 380 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 YBX1P67809 324 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 VGLL4Q14135 290 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF774Q6NX45 483 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SLC39A5Q6ZMH5 540 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 FBXO16Q8IX29 292 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZBTB8AQ96BR9 441 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 FUBP3Q96I24 572 aaKnown RBP eCLIP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ADGRG7Q96K78 797 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF48Q96MX3 618 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 OR5B12Q96R08 314 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SOSTQ9BQB4 213 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SGPP1Q9BX95 441 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 DERL2Q9GZP9 239 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 LPAR2Q9HBW0 351 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ELOVL2Q9NXB9 296 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PRODH2Q9UF12 536 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 LMO7Q8WWI1 1683 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CDK5RAP2Q96SN8 1893 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SCN9AQ15858 1988 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 A0A0U1RQV5 110 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 TCRBV5S1A1TA0A578 114 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ANKRD20A5PA0PJZ0 165 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 DDTLA6NHG4 134 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SCDO00767 359 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 NDUFB6O95139 128 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 TRBC1P01850 177 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 OR13C7P0DN81 318 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ADCYAP1P18509 176 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 MST1P26927 711 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 RABGGTBP53611 331 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SELENOVP59797 346 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 RPS13P62277 151 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 RPL23AP62750 156 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 SLC17A1Q14916 467 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 NKPD1Q17RQ9 610 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 DNM1P34Q6PK57 102 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CLEC20AQ6ZU45 233 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF280BQ86YH2 543 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PHYKPLQ8IUZ5 450 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ZNF664Q8N3J9 261 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 PGBD5Q8N414 524 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 WDTC1Q8N5D0 677 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 KRTCAP2Q8N6L1 136 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CASTOR1Q8WTX7 329 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 ESAMQ96AP7 390 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 REEP6Q96HR9 211 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 OR8D2Q9GZM6 311 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 FKRPQ9H9S5 495 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 GULP1Q9UBP9 304 aa5.31□□□□□ -1.56
SCN1A-216ENST00000637968 C14orf166Q9Y224 244 aaKnown RBP5.31□□□□□ -1.56
SCN1A-216ENST00000637968 CLDN16Q9Y5I7 305 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms