RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 PWWP2BQ6NUJ5 590 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 MTFR2Q6P444 385 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 TEX261Q6UWH6 196 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 FCRLAQ7L513 359 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 CDC20BQ86Y33 519 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 TIGD4Q8IY51 512 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 ZNF511Q8NB15 262 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 OR11G2Q8NGC1 345 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 OR8H1Q8NGG4 311 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 OR52I2Q8NH67 350 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 C17orf50Q8WW18 174 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 HMGB4Q8WW32 186 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 ORAI1Q96D31 301 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 RADILQ96JH8 1075 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 SORCS2Q96PQ0 1159 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 MMP25Q9NPA2 562 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 UBQLN4Q9NRR5 601 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 KLHL9Q9P2J3 617 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 OR5V1Q9UGF6 321 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 MRM2Q9UI43 246 aaKnown RBP11.63□□□□□ -0.55
LINC00540-203ENST00000631321 SCP2D1Q9UJQ7 156 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 FOXJ3Q9UPW0 622 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 U3KQ87 197 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 CACNA1IQ9P0X4 2223 aa11.63□□□□□ -0.55
LINC00540-203ENST00000631321 A0A1B0GVT2 93 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 OR2W5A6NFC9 320 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 OIP5O43482 229 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 GMDSO60547 372 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 KRT33AO76009 404 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 SLC22A5O76082 557 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 PSMB1P20618 241 aaKnown RBP11.62□□□□□ -0.55
LINC00540-203ENST00000631321 MAPK3P27361 379 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ZP1P60852 638 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 BIKQ13323 160 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ALKBH1Q13686 389 aaKnown RBP11.62□□□□□ -0.55
LINC00540-203ENST00000631321 SERTAD2Q14140 314 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 Q499Y3 187 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ESCO2Q56NI9 601 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 OLFML2AQ68BL7 652 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LCORQ96JN0 433 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-203ENST00000631321 MOGAT1Q96PD6 335 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LIN7BQ9HAP6 207 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 FBXL3Q9UKT7 428 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 RCE1Q9Y256 329 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 KLHDC2Q9Y2U9 406 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ETV7Q9Y603 341 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 AUP1Q9Y679 476 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LINC00862A6NCI5 91 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 C4orf47A7E2U8 309 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 FAM171A2A8MVW0 826 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 BLOC1S5-TXNDC5H3BN57 136 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 IL33O95760 270 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 HPXP02790 462 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 SYPP08247 313 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 UBL4AP11441 157 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 GRPRP30550 384 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 EPHA4P54764 986 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 CTXN1P60606 82 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 EGR4Q05215 589 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ALG10Q5BKT4 473 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 TMEM255AQ5JRV8 349 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 STAC2Q6ZMT1 411 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 DNM1P46Q6ZS02 220 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 MED25Q71SY5 747 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 FAM220AQ7Z4H9 259 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LRRTM1Q86UE6 522 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LSM14AQ8ND56 463 aaKnown RBP11.62□□□□□ -0.55
LINC00540-203ENST00000631321 ZNF680Q8NEM1 530 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 NSMAFQ92636 917 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 HAVCR1Q96D42 359 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 LMF1Q96S06 567 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 MNTQ99583 582 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 GMEB2Q9UKD1 530 aa11.62□□□□□ -0.55
LINC00540-203ENST00000631321 A0A1B0GUH1 482 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 ANKRD20A5PA0PJZ0 165 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 TMEM72A0PK05 275 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 LEUTXA8MZ59 168 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 B4DGG1 531 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 PSMD9O00233 223 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 OR8G3PP0DMU2 310 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 MST1P26927 711 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 MAGEB1P43366 347 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 BLKP51451 505 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 LTBQ06643 244 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 LIPNQ5VXI9 398 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 ZNF433Q8N7K0 673 aaPredicted RBP11.61□□□□□ -0.55
LINC00540-203ENST00000631321 BEST4Q8NFU0 473 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 S100A16Q96FQ6 103 aaKnown RBP11.61□□□□□ -0.55
LINC00540-203ENST00000631321 TSSK2Q96PF2 358 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 MAP3K3Q99759 626 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 UTP23Q9BRU9 249 aaKnown RBP11.61□□□□□ -0.55
LINC00540-203ENST00000631321 LRRC61Q9BV99 259 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 TSPAN10Q9H1Z9 355 aaPredicted RBP11.61□□□□□ -0.55
LINC00540-203ENST00000631321 UCK1Q9HA47 277 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 C12orf10Q9HB07 376 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 FRRS1LQ9P0K9 344 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 A0A087WV48 116 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 TRBV5-7A0A0A0MS05 114 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 SSNA1O43805 119 aa11.61□□□□□ -0.55
LINC00540-203ENST00000631321 TSC22D2O75157 780 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms