RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SLC6A5Q9Y345 797 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 PCDHGB2Q9Y5G2 931 aa9.65□□□□□ -0.87
CUX1-221ENST00000622516 PATE3B3GLJ2 98 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ARPC3O15145 178 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 LANCL1O43813 399 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 TSPAN2O60636 221 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 CCNKO75909 580 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 CD14P08571 375 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ASAH2BP0C7U1 165 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 MTNR1BP49286 362 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 CENPAP49450 140 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 GBX2P52951 348 aaPredicted RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 FBXW4P57775 412 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 KRR1Q13601 381 aaKnown RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 MESTQ5EB52 335 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 LYSMD4Q5XG99 296 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 LCN10Q6JVE6 187 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 SLITRK4Q8IW52 837 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ZNF440Q8IYI8 595 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 GDPD1Q8N9F7 314 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 FAM181AQ8N9Y4 354 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 C19orf18Q8NEA5 215 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 OR4M1Q8NGD0 313 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 OR14A16Q8NHC5 309 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ATOH1Q92858 354 aaPredicted RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 DMRTB1Q96MA1 342 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 MN1Q10571 1320 aaPredicted RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 KIF26BQ2KJY2 2108 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 B4DXG7 233 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 SHISA8B8ZZ34 492 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 HIST1H2ABP04908 130 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 CFIP05156 583 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 TFPIP10646 304 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 PSKH1P11801 424 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 SNRPBP14678 240 aaKnown RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 MYL9P24844 172 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 THBS2P35442 1172 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ADH7P40394 386 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 NRG3P56975 720 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 RPS11P62280 158 aaKnown RBP eCLIP9.64□□□□□ -0.876e-6■■■■■ 44.3
CUX1-221ENST00000622516 LGALS3BPQ08380 585 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 CDK5R1Q15078 307 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 ZSWIM7Q19AV6 140 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 HBMQ6B0K9 141 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 WDR74Q6RFH5 385 aaPredicted RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 HIST3H2AQ7L7L0 130 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 PM20D2Q8IYS1 436 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 LRRC75AQ8NAA5 344 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 UBASH3BQ8TF42 649 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 HIST1H2ACQ93077 130 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 NMNAT2Q9BZQ4 307 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 TSPAN10Q9H1Z9 355 aaPredicted RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 ZNF768Q9H5H4 540 aaKnown RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 EVA1AQ9H8M9 152 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 MRTO4Q9UKD2 239 aaKnown RBP9.64□□□□□ -0.87
CUX1-221ENST00000622516 NOX1Q9Y5S8 564 aa9.64□□□□□ -0.87
CUX1-221ENST00000622516 A0A0G2JK05 382 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 OPN1LWP04000 364 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 IL11P20809 199 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 EVI2BP34910 448 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 HTR3AP46098 478 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RNF4P78317 190 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 POU4F2Q12837 409 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 KCNJ8Q15842 424 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 HLA-BQ31612 363 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 AGAP6Q5VW22 663 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RSBN1Q5VWQ0 802 aaPredicted RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 ZNF57Q68EA5 555 aaPredicted RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 MZT2AQ6P582 158 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 TMEM71Q6P5X7 295 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 DPY19L4Q7Z388 723 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RAB43Q86YS6 212 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RDH10Q8IZV5 341 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LILRB2Q8N423 598 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 EID2Q8N6I1 236 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SPERTQ8NA61 448 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LILRB1Q8NHL6 650 aaPredicted RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 TRMT10AQ8TBZ6 339 aaKnown RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 GPR119Q8TDV5 335 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SMIM19Q96E16 107 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 AGAP4Q96P64 663 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SLC19A3Q9BZV2 496 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LAT2Q9GZY6 243 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 HDHD2Q9H0R4 259 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RXFP3Q9NSD7 469 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 TAS2R5Q9NYW4 299 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 NLKQ9UBE8 527 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 VDAC3Q9Y277 283 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 RALGAPA1Q6GYQ0 2036 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 MEIOCA2RUB1 952 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SCRG1O75711 98 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SLC25A12O75746 678 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SC5DO75845 299 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 SRP9P49458 86 aaKnown RBP9.63□□□□□ -0.87
CUX1-221ENST00000622516 QPRTQ15274 297 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 ETFDHQ16134 617 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 CDONQ4KMG0 1287 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 LRRC69Q6ZNQ3 347 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 UBQLNLQ8IYU4 475 aa9.63□□□□□ -0.87
CUX1-221ENST00000622516 IZUMO1Q8IYV9 350 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms