RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ELF3P78545 371 aaPredicted RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 SRSF1Q07955 248 aaKnown RBP eCLIP17.52■□□□□ 0.43e-6■□□□□ 11.2
UPF3A-211ENST00000618700 ANKDD1AQ495B1 522 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 CLEC18BQ6UXF7 455 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 NHLRC1Q6VVB1 395 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 OAFQ86UD1 273 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 GPAT4Q86UL3 456 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 CCDC71Q8IV32 467 aaPredicted RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 HS3ST5Q8IZT8 346 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 KDM8Q8N371 416 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 ZIC4Q8N9L1 334 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 AQP11Q8NBQ7 271 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 CLEC18CQ8NCF0 446 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 OR5K1Q8NHB7 308 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 GNPDA2Q8TDQ7 276 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 NRBF2Q96F24 287 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 CENPNQ96H22 339 aaPredicted RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 OXGR1Q96P68 337 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 DGCR6LQ9BY27 220 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 ZNF629Q9UEG4 869 aaPredicted RBP17.52■□□□□ 0.4
UPF3A-211ENST00000618700 SIGLEC7Q9Y286 467 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 EMC9Q9Y3B6 208 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 FLVCR1Q9Y5Y0 555 aa17.52■□□□□ 0.4
UPF3A-211ENST00000618700 TRAV27A0A087WT01 109 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 ZG16O60844 167 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 GASTP01350 101 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 ADORA3P0DMS8 318 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 CHRNB4P30926 498 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 SIRPAP78324 504 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 RPL18Q07020 188 aaKnown RBP17.51■□□□□ 0.39
UPF3A-211ENST00000618700 TSPAN31Q12999 210 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 EEF1A1P5Q5VTE0 462 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 VWA1Q6PCB0 445 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 CREB3L2Q70SY1 520 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 PXKQ7Z7A4 578 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 EPHX4Q8IUS5 362 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 LIX1LQ8IVB5 337 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 INTS1Q8N201 2190 aaKnown RBP17.51■□□□□ 0.39
UPF3A-211ENST00000618700 OR6K3Q8NGY3 331 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 MOSPD2Q8NHP6 518 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 MCCC2Q9HCC0 563 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 PDP1Q9P0J1 537 aaPredicted RBP17.51■□□□□ 0.39
UPF3A-211ENST00000618700 MGAT4BQ9UQ53 548 aa17.51■□□□□ 0.39
UPF3A-211ENST00000618700 UNC119BA6NIH7 251 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 BLOC1S5-TXNDC5H3BN57 136 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 HLA-DOBP13765 273 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 ZNF26P17031 533 aaPredicted RBP17.5■□□□□ 0.39
UPF3A-211ENST00000618700 OPRM1P35372 400 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 AQP2P41181 271 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 SMSP52788 366 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 FXYD6P3P58550 94 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 ZBED5Q49AG3 693 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 TMEM201Q5SNT2 666 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 NUFIP2Q7Z417 695 aaKnown RBP17.5■□□□□ 0.39
UPF3A-211ENST00000618700 CNEP1R1Q8N9A8 125 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 LRRC75AQ8NAA5 344 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 OR51A7Q8NH64 312 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 ITLN2Q8WWU7 325 aaPredicted RBP17.5■□□□□ 0.39
UPF3A-211ENST00000618700 TMEM45BQ96B21 275 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 STARD4Q96DR4 205 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 ZNF385AQ96PM9 386 aaKnown RBP17.5■□□□□ 0.39
UPF3A-211ENST00000618700 TNFRSF13CQ96RJ3 184 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 SEMA6AQ9H2E6 1030 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 COQ3Q9NZJ6 369 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 NOX1Q9Y5S8 564 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 MAGED1Q9Y5V3 778 aaPredicted RBP17.5■□□□□ 0.39
UPF3A-211ENST00000618700 DOPEY1Q5JWR5 2465 aa17.5■□□□□ 0.39
UPF3A-211ENST00000618700 WIPF3A6NGB9 483 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 C11orf98E9PRG8 122 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 RNF13O43567 381 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 PTP4A3O75365 173 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 OR6A2O95222 327 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 ADAP00813 363 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 CGAP01215 116 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 ZNF43P17038 809 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 AGAP20933 346 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 NTF4P34130 210 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 POU3F1Q03052 451 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-211ENST00000618700 CD300LDQ6UXZ3 194 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 BTLAQ7Z6A9 289 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 GALNT5Q7Z7M9 940 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 HIPK1Q86Z02 1210 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 UEVLDQ8IX04 471 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 PQLC1Q8N2U9 271 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 SVOPLQ8N434 492 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 RELL2Q8NC24 303 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-211ENST00000618700 ASB5Q8WWX0 329 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 ZNF775Q96BV0 537 aaPredicted RBP17.49■□□□□ 0.39
UPF3A-211ENST00000618700 SDCCAG3Q96C92 435 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 FEVQ99581 238 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 NIPSNAP1Q9BPW8 284 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 GABARAPL1Q9H0R8 117 aa17.49■□□□□ 0.39
UPF3A-211ENST00000618700 LRRK2Q5S007 2527 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 NPIPB13A6NJU9 1138 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 NPIPB4C9JG80 1138 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 CD8BP10966 210 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 POU2F1P14859 743 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 ZNF23P17027 643 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 BMP5P22003 454 aa17.48■□□□□ 0.39
UPF3A-211ENST00000618700 PRKACGP22612 351 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms