RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 RASSF2P50749 326 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 PSME3P61289 254 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 LOXL1Q08397 574 aaPredicted RBP16.59■□□□□ 0.25
CDX1-202ENST00000616154 RBBP4Q09028 425 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SCARB2Q14108 478 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 RAB35Q15286 201 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 TMEM249Q2WGJ8 235 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 CHRFAM7AQ494W8 412 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 C6orf52Q5T4I8 152 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 C16orf89Q6UX73 402 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 ASRGL1Q7L266 308 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 COMTD1Q86VU5 262 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 KRT73Q86Y46 540 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 PTOV1Q86YD1 416 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SLC15A3Q8IY34 581 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 HIPK4Q8NE63 616 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 STK35Q8TDR2 534 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 TMEM45BQ96B21 275 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 TNFRSF13CQ96RJ3 184 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SH3GL1Q99961 368 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 BTBD10Q9BSF8 475 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SF3B5Q9BWJ5 86 aaKnown RBP16.59■□□□□ 0.25
CDX1-202ENST00000616154 LRMDAQ9H2I8 198 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 KAT8Q9H7Z6 458 aaKnown RBP16.59■□□□□ 0.25
CDX1-202ENST00000616154 EVA1AQ9H8M9 152 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SLC17A5Q9NRA2 495 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 SLC7A10Q9NS82 523 aa16.59■□□□□ 0.25
CDX1-202ENST00000616154 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.59■□□□□ 0.25
CDX1-202ENST00000616154 PRORSD1PA6NEY8 169 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 AQP7P3A6NL99 342 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 FRS3O43559 492 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 SLC25A16P16260 332 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 P2RY4P51582 365 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 VLDLRP98155 873 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 TGFBR3Q03167 851 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 SELPLGQ14242 412 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 DNAL1Q4LDG9 190 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 TSPO2Q5TGU0 170 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 CADM2Q8N3J6 435 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 ZNF525Q8N782 197 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 BHLHE22Q8NFJ8 381 aaPredicted RBP16.58■□□□□ 0.24
CDX1-202ENST00000616154 C1QTNF6Q9BXI9 259 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 FKRPQ9H9S5 495 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 SPAG4Q9NPE6 437 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 CMTM6Q9NX76 183 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 AP3M1Q9Y2T2 418 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 ATP23Q9Y6H3 246 aa16.58■□□□□ 0.24
CDX1-202ENST00000616154 RNF212BA8MTL3 300 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 FTCDNL1E5RQL4 147 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 NME4O00746 187 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 GZMMP51124 257 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 SPATS1Q496A3 300 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 RABL3Q5HYI8 236 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 C9orf135Q5VTT2 229 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 C1orf140Q5VVS0 124 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 LSRQ86X29 649 aaPredicted RBP16.57■□□□□ 0.24
CDX1-202ENST00000616154 CALHM3Q86XJ0 350 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 DEFB107AQ8IZN7 70 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 ARHGAP24Q8N264 748 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 C11orf65Q8NCR3 313 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 HTRA1Q92743 480 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 ZNF607Q96SK3 696 aa16.57■□□□□ 0.24
CDX1-202ENST00000616154 PRPF19Q9UMS4 504 aaKnown RBP16.57■□□□□ 0.24
CDX1-202ENST00000616154 TPST1O60507 370 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 MFN2O95140 757 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 CSF3P09919 207 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 BMP4P12644 408 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 HTR2AP28223 471 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 MPGP29372 298 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 SLC7A2P52569 658 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 MTPNP58546 118 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 MXRA7P84157 204 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 EGR4Q05215 589 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 CHRNB3Q05901 458 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 CEACAM7Q14002 265 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 OTUD3Q5T2D3 398 aaPredicted RBP16.56■□□□□ 0.24
CDX1-202ENST00000616154 C5orf46Q6UWT4 87 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 C10orf105Q8TEF2 133 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 FAM168AQ92567 244 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 PTDSS2Q9BVG9 487 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 TESQ9UGI8 421 aaKnown RBP16.56■□□□□ 0.24
CDX1-202ENST00000616154 CD300AQ9UGN4 299 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 ANGPT4Q9Y264 503 aa16.56■□□□□ 0.24
CDX1-202ENST00000616154 GYG2O15488 501 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 SERPINB7O75635 380 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 VAMP5O95183 116 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 FAM157CP0CG43 387 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 APOBEC3AP31941 199 aaPredicted RBP16.55■□□□□ 0.24
CDX1-202ENST00000616154 EFNA4P52798 201 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 PRPS1P60891 318 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 HOXC5Q00444 222 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 BNIP2Q12982 314 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 OR7A5Q15622 319 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 FXNQ16595 210 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 GLIPR1L2Q4G1C9 344 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 SLC30A8Q8IWU4 369 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 PHC2Q8IXK0 858 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 TMEM99Q8N816 258 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 ZIC4Q8N9L1 334 aa16.55■□□□□ 0.24
CDX1-202ENST00000616154 POMGNT2Q8NAT1 580 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms