RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NDUFS8O00217 210 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 TRAPPC6AO75865 159 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 MFN2O95140 757 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ACSL3O95573 720 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CH25HO95992 272 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CSN3P07498 182 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 OR2T7P0C7T2 308 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PRSS56P0CW18 603 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CCL3P10147 92 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CYP11B1P15538 503 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 DDX5P17844 614 aaKnown RBP3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PRTN3P24158 256 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 GDF1P27539 372 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PIK3R1P27986 724 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PCK1P35558 622 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SLC9A3P48764 834 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 EFNA4P52798 201 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PRRX1P54821 245 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 MTCP1P56278 107 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SNRPEP62304 92 aaKnown RBP3.71□□□□□ -1.82
LINC00540-201ENST00000611481 TNFRSF17Q02223 184 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SRYQ05066 204 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SLC34A1Q06495 639 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ZNF718Q3SXZ3 478 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ZCWPW2Q504Y3 356 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 XKR6Q5GH73 641 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 DEFB121Q5J5C9 76 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 GCNT6Q5T4J0 391 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ZDHHC20Q5W0Z9 365 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 GGNBP1Q5YKI7 109 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 MFSD12Q6NUT3 480 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CCDC25Q86WR0 208 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 CENPLQ8N0S6 344 aaPredicted RBP3.71□□□□□ -1.82
LINC00540-201ENST00000611481 LRRC25Q8N386 305 aaPredicted RBP3.71□□□□□ -1.82
LINC00540-201ENST00000611481 SPATA6LQ8N4H0 392 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ATPAF2Q8N5M1 289 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 KIR3DL3Q8N743 410 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 NIPA2Q8N8Q9 360 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 FADS6Q8N9I5 356 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 LINC01555Q8NAE3 123 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 TMEM35BQ8NCS4 154 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 PLPP5Q8NEB5 264 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 MNS1Q8NEH6 495 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ARRDC2Q8TBH0 407 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 ZPLD1Q8TCW7 415 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 C22orf15Q8WYQ4 148 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 IL17FQ96PD4 163 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 NMNAT2Q9BZQ4 307 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 BPESC1Q9GZL8 116 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 VCX2Q9H322 139 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 YY1AP1Q9H869 796 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 IL26Q9NPH9 171 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 GRID1Q9ULK0 1009 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 BOKQ9UMX3 212 aaPredicted RBP3.71□□□□□ -1.82
LINC00540-201ENST00000611481 MOKQ9UQ07 419 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 DLGAP4Q9Y2H0 992 aa3.71□□□□□ -1.82
LINC00540-201ENST00000611481 LOC105371242A0A075B767 164 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GLYATL1P3A0A0U1RQE8 302 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 A0A0U1RQJ8 604 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 LINC00854A0A1B0GVQ3 168 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 SGK494L7N484 410 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 WWP2O00308 870 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ANKRD28O15084 1053 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 POLR2DO15514 142 aaKnown RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 XRCC3O43542 346 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 RGS14O43566 566 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PLPP2O43688 288 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PRKNO60260 465 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ATP6V1G1O75348 118 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 OR6A2O95222 327 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CLDN9O95484 217 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 LIPFP07098 398 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TNNI3P19429 210 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CALB2P22676 271 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PSMB5P28074 263 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PRLHRP49683 370 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ETV1P50549 477 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 CDH6P55285 790 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 SSTP61278 116 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PLOD1Q02809 727 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GAGE2BQ13066 116 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PKP1Q13835 747 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 DPYSL2Q16555 572 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TAF9Q16594 264 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TPD52L1Q16890 204 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GAGE2EQ4V326 116 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 TMEM41BQ5BJD5 291 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PPP6R3Q5H9R7 873 aaPredicted RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 NCMAPQ5T1S8 102 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PRAMEF20Q5VT98 475 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 C11orf71Q6IPW1 123 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GAGE2AQ6NT46 116 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 RBMS3Q6XE24 437 aaKnown RBP3.7□□□□□ -1.82
LINC00540-201ENST00000611481 PRSS41Q7RTY9 318 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ASPGQ86U10 573 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 NUDT13Q86X67 352 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 GRAMD2AQ8IUY3 354 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 SLC22A9Q8IVM8 553 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 ZDHHC21Q8IVQ6 265 aa3.7□□□□□ -1.82
LINC00540-201ENST00000611481 C1orf87Q8N0U7 546 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms