RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	ACTC1	P68032	377 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	ACTA1	P68133	377 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF117	Q03924	483 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	C17orf67	Q0P5P2	114 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CLN3	Q13286	438 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	ACER2	Q5QJU3	275 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	SMARCD3	Q6STE5	483 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CBLN3	Q6UW01	205 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	IL20RB	Q6UXL0	311 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	LHFPL3	Q86UP9	236 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	TPRA1	Q86W33	373 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CPO	Q8IVL8	374 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	SIRT6	Q8N6T7	355 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	OR4F15	Q8NGB8	312 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	DUSP19	Q8WTR2	217 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	RNF138	Q8WVD3	245 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	PSMF1	Q92530	271 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	OR2B2	Q9GZK3	357 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	PPP1R3E	Q9H7J1	279 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	METTL7A	Q9H8H3	244 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	TRIM36	Q9NQ86	728 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	SDHAF3	Q9NRP4	125 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	KLRF1	Q9NZS2	232 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF221	Q9UK13	617 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341	SIGLEC7	Q9Y286	467 aa		10.61	□□□□□ -0.71
VRK3-223	ENST00000601341		A0A0B4J2E0	115 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341		A0A1B0GWA3	101 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341		A0A1B0GX12	115 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CCDC182	A6NF36	153 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	HMX3	A6NHT5	357 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	OIP5	O43482	229 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PIP5K1C	O60331	668 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	RGS9	O75916	674 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CEL	P19835	753 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ITGA3	P26006	1051 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ITPKB	P27987	946 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	P2RX1	P51575	399 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	RRAD	P55042	308 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	FXYD6P3	P58550	94 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	MXD1	Q05195	221 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	SNTA1	Q13424	505 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	LCN1P1	Q5VSP4	162 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ULK3	Q6PHR2	472 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CADM2	Q8N3J6	435 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CELF2-AS1	Q8N7Q2	184 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ATP6V1C2	Q8NEY4	427 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	OR5W2	Q8NH69	310 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	SPRYD4	Q8WW59	207 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	BPIFA2	Q96DR5	249 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	SGCZ	Q96LD1	299 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CCNL2	Q96S94	520 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	TRAF4	Q9BUZ4	470 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	SCNM1	Q9BWG6	230 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	HPF1	Q9NWY4	346 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ICAM5	Q9UMF0	924 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PRR23D1	E9PI22	279 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	RNF13	O43567	381 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PLPP2	O43688	288 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PTP4A3	O75365	173 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CH25H	O95992	272 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	LALBA	P00709	142 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	MT-ND5	P03915	603 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CLEC2L	P0C7M8	214 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PRR23D2	P0DMB1	279 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	IFI30	P13284	250 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	PGC	P20142	388 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	CBFB	Q13951	182 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ZMAT1	Q5H9K5	638 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ALG10B	Q5I7T1	473 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	B3GNTL1	Q67FW5	361 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	VASN	Q6EMK4	673 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	WBP2NL	Q6ICG8	309 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	MZT2B	Q6NZ67	158 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM81	Q6P7N7	255 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	RTL4	Q6ZR62	310 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	TEX19	Q8NA77	164 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	DUSP18	Q8NEJ0	188 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	OTULIN	Q96BN8	352 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ARSG	Q96EG1	525 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF486	Q96H40	463 aa	Predicted RBP	10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	ATF6B	Q99941	703 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	MFRP	Q9BY79	579 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	GALNT9	Q9HCQ5	603 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	STMN3	Q9NZ72	180 aa		10.6	□□□□□ -0.71
VRK3-223	ENST00000601341	MEIOC	A2RUB1	952 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	ANKRD61	A6NGH8	418 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	RIIAD1	A6NNX1	92 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	C12orf71	A8MTZ7	269 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	ADAM10	O14672	748 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	NKX2-8	O15522	239 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	TMEM127	O75204	238 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	NUDT14	O95848	222 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	IGF2	P01344	180 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	IFNG	P01579	166 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	CD1A	P06126	327 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	PEPD	P12955	493 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	ZNF3	P17036	446 aa		10.59	□□□□□ -0.71
VRK3-223	ENST00000601341	SPINK2	P20155	84 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms