RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ALG10BQ5I7T1 473 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 C1QTNF12Q5T7M4 302 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 FAM166AQ6J272 317 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 EPGNQ6UW88 154 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 H1FNTQ75WM6 255 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 OR4F15Q8NGB8 312 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 MSI2Q96DH6 328 aaKnown RBP15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 EMC6Q9BV81 110 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 RAB1BQ9H0U4 201 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 TMBIM4Q9HC24 238 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 DYNLRB1Q9NP97 96 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 CCDC167Q9P0B6 97 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 SLAMF8Q9P0V8 285 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 LPAR3Q9UBY5 353 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 SLC13A4Q9UKG4 626 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 PRDM4Q9UKN5 801 aa15.26■□□□□ 0.03
SHKBP1-223ENST00000600552 TRAV36DV7A0A075B6V5 113 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 LOC390937A0A1W2PQ73 354 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 LRP5LA4QPB2 252 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 VWC2LB2RUY7 222 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 POLR3GO15318 223 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 OR2T1O43869 369 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 CD79AP11912 226 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 CBR1P16152 277 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 NPR2P20594 1047 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 CDK6Q00534 326 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 PIGFQ07326 219 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 FADDQ13158 208 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 GLIPR1L2Q4G1C9 344 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 PHYHD1Q5SRE7 291 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 FAM120AOSQ5T036 256 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 KRT80Q6KB66 452 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 MDP1Q86V88 176 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 COMTD1Q86VU5 262 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 KRT73Q86Y46 540 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 UEVLDQ8IX04 471 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 MAGEE2Q8TD90 523 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 OR2M2Q96R28 347 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 RSPO3Q9BXY4 272 aaPredicted RBP15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 TCF7L2Q9NQB0 619 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 SLC25A37Q9NYZ2 338 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 B3GAT1Q9P2W7 334 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 RCE1Q9Y256 329 aa15.25■□□□□ 0.03
SHKBP1-223ENST00000600552 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.25■□□□□ 0.033e-7■■□□□ 13.4
SHKBP1-223ENST00000600552 ZNF503-AS2A6NEH8 195 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 NDUFS8O00217 210 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 AKAP8O43823 692 aaKnown RBP15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 ZNF432O94892 652 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 HPRP00739 348 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 HLA-HP01893 362 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 ARAFP10398 606 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 HLA-DOBP13765 273 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 ETS2P15036 469 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 PRKAR1BP31321 381 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 AQP5P55064 265 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 RGS8P57771 180 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 PMS2P3Q13401 168 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 PAGE3Q5JUK9 113 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 FAM69AQ5T7M9 428 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 REEP3Q6NUK4 255 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 MSRB3Q8IXL7 192 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 C10orf111Q8N326 155 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 PIK3C3Q8NEB9 887 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 TLCD1Q96CP7 247 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 SPDL1Q96EA4 605 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 BOD1Q96IK1 185 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 EBF4Q9BQW3 602 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 SPATA5L1Q9BVQ7 753 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 BPESC1Q9GZL8 116 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 PLK3Q9H4B4 646 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 TMEM27Q9HBJ8 222 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 CRNNQ9UBG3 495 aaPredicted RBP15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 POFUT2Q9Y2G5 429 aa15.24■□□□□ 0.03
SHKBP1-223ENST00000600552 CUBNO60494 3623 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 IGKV1D-42A0A075B6H8 117 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 IGHV2OR16-5A0A0B4J2B6 119 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 IGLV1-44P01699 117 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 ERCC1P07992 297 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 HOXB1P14653 301 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 DAOP14920 347 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 AHCYP23526 432 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 PAX7P23759 505 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 IDH3AP50213 366 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 SLC18A1P54219 525 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 SNTB2Q13425 540 aaKnown RBP15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 CAMK2DQ13557 499 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 SCARB2Q14108 478 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 DAG1Q14118 895 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 AGKQ53H12 422 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 ULK3Q6PHR2 472 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 FUNDC1Q8IVP5 155 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 DNAJA4Q8WW22 397 aaPredicted RBP15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 SLC47A1Q96FL8 570 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 TXNDC15Q96J42 360 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 ASPNQ9BXN1 380 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 TPK1Q9H3S4 243 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 TMEM160Q9NX00 188 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 MED29Q9NX70 200 aa15.23■□□□□ 0.03
SHKBP1-223ENST00000600552 VAPAQ9P0L0 249 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms