RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 DTX2Q86UW9 622 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 CARM1Q86X55 608 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 OR4D11Q8NGI4 311 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 PIGXQ8TBF5 258 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 SLC38A4Q969I6 547 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 HS6ST2Q96MM7 605 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 USB1Q9BQ65 265 aaKnown RBP10.97□□□□□ -0.65
UPF1-203ENST00000594504 SH3GLB1Q9Y371 365 aa10.97□□□□□ -0.65
UPF1-203ENST00000594504 RTTNQ86VV8 2226 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 IGHV4-30-2A0A087WSY4 118 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 IGKV3D-15A0A087WSY6 115 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 A0A087WUJ7 227 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 LIPT2A6NK58 231 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 B2RBV5 119 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 M0R1B8 84 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 CD5LO43866 347 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 AHSA1O95433 338 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 TP53P04637 393 aaPredicted RBP10.96□□□□□ -0.65
UPF1-203ENST00000594504 HSD17B1P14061 328 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 CDH12P55289 794 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 SELENOWP63302 87 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 H3F3AP84243 136 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 PDK3Q15120 406 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 ETFDHQ16134 617 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 ENTPD8Q5MY95 495 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 SLC22A25Q6T423 547 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 PAQR6Q6TCH4 344 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 B3GLCTQ6Y288 498 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 TRPM8Q7Z2W7 1104 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 RBM45Q8IUH3 476 aaKnown RBP10.96□□□□□ -0.65
UPF1-203ENST00000594504 DEFB107AQ8IZN7 70 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 RNF148Q8N7C7 305 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 SPATA3Q8NHX4 192 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 RNF217Q8TC41 542 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 ADAMTS16Q8TE57 1224 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 FAM162AQ96A26 154 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 APH1AQ96BI3 265 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 TPD52L3Q96J77 140 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 CDRT15Q96T59 188 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 NAA11Q9BSU3 229 aaPredicted RBP10.96□□□□□ -0.65
UPF1-203ENST00000594504 TAPBPLQ9BX59 468 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 CACNG6Q9BXT2 260 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 POLR2J2Q9GZM3 115 aaKnown RBP10.96□□□□□ -0.65
UPF1-203ENST00000594504 POLR2J3Q9H1A7 115 aaKnown RBP10.96□□□□□ -0.65
UPF1-203ENST00000594504 SLC25A15Q9Y619 301 aa10.96□□□□□ -0.65
UPF1-203ENST00000594504 IGKV1D-42A0A075B6H8 117 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 TRAPPC13A5PLN9 417 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 CPSF4LA6NMK7 179 aaKnown RBP10.95□□□□□ -0.66
UPF1-203ENST00000594504 CHP2O43745 196 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 OR2T1O43869 369 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 MRPL33O75394 65 aaKnown RBP10.95□□□□□ -0.66
UPF1-203ENST00000594504 GMNNO75496 209 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 ZNF682O95780 498 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 SERPINA1P01009 418 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 ITGA5P08648 1049 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 T-ENOLP0DO92 83 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 NCK1P16333 377 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 TNFRSF1BP20333 461 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 CD40P25942 277 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 TTKP33981 857 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 SLC16A1P53985 500 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 EGR4Q05215 589 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 CEACAM7Q14002 265 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 OR7A5Q15622 319 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 GABRA6Q16445 453 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 FXNQ16595 210 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 FAM69AQ5T7M9 428 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 AGAP6Q5VW22 663 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 C11orf71Q6IPW1 123 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 DEF8Q6ZN54 512 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 CBLL1Q75N03 491 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 P2RY8Q86VZ1 359 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 WDR31Q8NA23 367 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 RBM15BQ8NDT2 890 aaKnown RBP10.95□□□□□ -0.66
UPF1-203ENST00000594504 MFSD8Q8NHS3 518 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 KTI12Q96EK9 354 aaPredicted RBP10.95□□□□□ -0.66
UPF1-203ENST00000594504 MUS81Q96NY9 551 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 EPYCQ99645 322 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 RHNO1Q9BSD3 238 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 TMEM43Q9BTV4 400 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 GRIP2Q9C0E4 1043 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 EMC3Q9P0I2 261 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 CD300AQ9UGN4 299 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 EGFL7Q9UHF1 273 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 MAGEL2Q9UJ55 1249 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 RPS6KA6Q9UK32 745 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 POU2F3Q9UKI9 436 aa10.95□□□□□ -0.66
UPF1-203ENST00000594504 YLPM1P49750 1951 aaKnown RBP10.95□□□□□ -0.66
UPF1-203ENST00000594504 CADP27708 2225 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 CSPG4Q6UVK1 2322 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 TRAV36DV7A0A075B6V5 113 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 A0A096LNT2 108 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 AQP7P3A6NL99 342 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 GPR171O14626 319 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 TLX2O43763 284 aaPredicted RBP10.94□□□□□ -0.66
UPF1-203ENST00000594504 FZD7O75084 574 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 TCN1P20061 433 aaPredicted RBP10.94□□□□□ -0.66
UPF1-203ENST00000594504 RPS5P46782 204 aaKnown RBP10.94□□□□□ -0.66
UPF1-203ENST00000594504 OR1E2P47887 323 aa10.94□□□□□ -0.66
UPF1-203ENST00000594504 FABP6P51161 128 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms