RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FFAR1O14842 300 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 SLC43A1O75387 559 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 THBDP07204 575 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 ASAH2BP0C7U1 165 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 RHCEP18577 417 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 FUT1P19526 365 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 MPGP29372 298 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 SELENOPP49908 381 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 UGT2B15P54855 530 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 KRTAP10-9P60411 292 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 TIMM23BQ5SRD1 257 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 RRM2BQ7LG56 351 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 LURAP1LQ8IV03 231 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 PFN4Q8NHR9 129 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 MCUR1Q96AQ8 359 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 MUCL1Q96DR8 90 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 LINC00470Q9BZP3 86 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 ANKRD19PQ9H560 264 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 TAS2R5Q9NYW4 299 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 ACTR3BQ9P1U1 418 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 EDARQ9UNE0 448 aa13.25□□□□□ -0.29
UPF1-202ENST00000594243 ZNF726A6NNF4 738 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 BLOC1S5-TXNDC5H3BN57 136 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 PDLIM1O00151 329 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 RNF13O43567 381 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 OR7A10O76100 309 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 UBOX5O94941 541 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 HPRP00739 348 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 HRGP04196 525 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 POU3F1Q03052 451 aaPredicted RBP13.24□□□□□ -0.29
UPF1-202ENST00000594243 TRIM25Q14258 630 aaKnown RBP13.24□□□□□ -0.29
UPF1-202ENST00000594243 STK11Q15831 433 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 BEX5Q5H9J7 111 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 MTX3Q5HYI7 312 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 CDC20BQ86Y33 519 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 CDK20Q8IZL9 346 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 LRRC17Q8N6Y2 441 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 PIK3C3Q8NEB9 887 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 ANKK1Q8NFD2 765 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 LIPHQ8WWY8 451 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 POP5Q969H6 163 aaKnown RBP13.24□□□□□ -0.29
UPF1-202ENST00000594243 PIK3IP1Q96FE7 263 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 C7orf34Q96L11 122 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 MUS81Q96NY9 551 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 NMNAT1Q9HAN9 279 aaPredicted RBP13.24□□□□□ -0.29
UPF1-202ENST00000594243 NDUFAF4Q9P032 175 aa13.24□□□□□ -0.29
UPF1-202ENST00000594243 OR5H1A6NKK0 313 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 DEFB108AA8MXU0 73 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 ZNF587BE7ETH6 402 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 C11orf98E9PRG8 122 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 GYG2O15488 501 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 KLF4O43474 513 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 TRAF3IP2O43734 574 aaPredicted RBP13.23□□□□□ -0.29
UPF1-202ENST00000594243 RAD51DO75771 328 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 ZNF432O94892 652 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 PRSS23O95084 383 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 STAMBPO95630 424 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 ITGA5P08648 1049 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 IFI30P13284 250 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 HLA-DOBP13765 273 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 NR1H2P55055 460 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 TAB1Q15750 504 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 GABRA6Q16445 453 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 C1QTNF12Q5T7M4 302 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 ZNF730Q6ZMV8 503 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 SLC46A3Q7Z3Q1 461 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 NANOGNBQ7Z5D8 188 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 TSEN54Q7Z6J9 526 aaKnown RBP13.23□□□□□ -0.29
UPF1-202ENST00000594243 DHFR2Q86XF0 187 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 WFDC8Q8IUA0 241 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 GPR137CQ8N3F9 429 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 FAM86B1Q8N7N1 296 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 C1orf162Q8NEQ5 155 aaPredicted RBP13.23□□□□□ -0.29
UPF1-202ENST00000594243 ACOT11Q8WXI4 607 aaPredicted RBP13.23□□□□□ -0.29
UPF1-202ENST00000594243 BPIFA2Q96DR5 249 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 ADAD1Q96M93 576 aaKnown RBP13.23□□□□□ -0.29
UPF1-202ENST00000594243 MAN2C1Q9NTJ4 1040 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 C20orf141Q9NUB4 165 aa13.23□□□□□ -0.29
UPF1-202ENST00000594243 A0A087WUU8 490 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 A0A1W2PRQ8 180 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 SLC35F4A4IF30 521 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 RPL36A-HNRNPH2H7BZ11 118 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 hCG_2039718K7EN88 272 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 UPK3AO75631 287 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 SERPINI2O75830 405 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 SEMG1P04279 462 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 FABP3P05413 133 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 H1F0P07305 194 aaKnown RBP13.22□□□□□ -0.29
UPF1-202ENST00000594243 FOXG1P55316 489 aaPredicted RBP13.22□□□□□ -0.29
UPF1-202ENST00000594243 SMIM11AP58511 58 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 VLDLRP98155 873 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 PRKCDQ05655 676 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 DGCR6Q14129 220 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 PPA1Q15181 289 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 ANKDD1AQ495B1 522 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 DNAL1Q4LDG9 190 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 C9orf135Q5VTT2 229 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 ALKBH2Q6NS38 261 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 HMBOX1Q6NT76 420 aa13.22□□□□□ -0.29
UPF1-202ENST00000594243 NHLRC1Q6VVB1 395 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms