RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 AKR7A3O95154 331 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 PPP1R3DO95685 299 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 CLDN20P56880 219 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 RPL27P61353 136 aaKnown RBP13.68□□□□□ -0.22
SS18-215ENST00000580642 PLEKHN1Q494U1 663 aaPredicted RBP13.68□□□□□ -0.22
SS18-215ENST00000580642 ARMC4Q5T2S8 1044 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 NXNL2Q5VZ03 156 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TMEM225Q6GV28 225 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 GID4Q8IVV7 300 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 ARIH2OSQ8N7S6 290 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TMEM99Q8N816 258 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TCEANCQ8N8B7 351 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 FNDC8Q8TC99 324 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 IPCEF1Q8WWN9 437 aaPredicted RBP13.68□□□□□ -0.22
SS18-215ENST00000580642 SMPDL3BQ92485 455 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 SARAFQ96BY9 339 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 WBP1Q96G27 269 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 ADAD1Q96M93 576 aaKnown RBP13.68□□□□□ -0.22
SS18-215ENST00000580642 TIMP4Q99727 224 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 PRDM14Q9GZV8 571 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 EXO5Q9H790 373 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 ZNF696Q9H7X3 374 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 GP6Q9HCN6 339 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 TPRKBQ9Y3C4 175 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 IER3IP1Q9Y5U9 82 aa13.68□□□□□ -0.22
SS18-215ENST00000580642 IGF2RP11717 2491 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 IRGMA1A4Y4 181 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 KDM4EB2RXH2 506 aaPredicted RBP13.67□□□□□ -0.22
SS18-215ENST00000580642 K7EM74 188 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 PRODHO43272 600 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 PRKYO43930 277 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 WBP4O75554 376 aaKnown RBP13.67□□□□□ -0.22
SS18-215ENST00000580642 AHCYP23526 432 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 CENPAP49450 140 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 SLC25A1P53007 311 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 SLC16A1P53985 500 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 GABARAPL2P60520 117 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 HSF1Q00613 529 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 ZNF362Q5T0B9 420 aaPredicted RBP13.67□□□□□ -0.22
SS18-215ENST00000580642 AADACL4Q5VUY2 407 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 NHLRC1Q6VVB1 395 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 CHMP1BQ7LBR1 199 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 UEVLDQ8IX04 471 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 ZNF786Q8N393 782 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 OR10D3Q8NH80 312 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 APH1BQ8WW43 257 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 SLC39A7Q92504 469 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 TAAR6Q96RI8 345 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 DEFB127Q9H1M4 99 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 RNF122Q9H9V4 155 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 CCNB1IP1Q9NPC3 277 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 RASSF1Q9NS23 344 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 IL20RAQ9UHF4 553 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.67□□□□□ -0.22
SS18-215ENST00000580642 RPL36Q9Y3U8 105 aaKnown RBP13.67□□□□□ -0.22
SS18-215ENST00000580642 ZNF175Q9Y473 711 aa13.67□□□□□ -0.22
SS18-215ENST00000580642 ANKRD11Q6UB99 2663 aaPredicted RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 PRR23D1E9PI22 279 aaPredicted RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 XKRYO14609 159 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 AKAP8O43823 692 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 SYNGR4O95473 234 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 PRR23D2P0DMB1 279 aaPredicted RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 NR2C1P13056 603 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ZNF43P17038 809 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ACVR2AP27037 513 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 EIF1AXP47813 144 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 STARP49675 285 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 SUCLG1P53597 346 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 CLDN15P56746 228 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ERVK-25P63136 954 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 PMP22Q01453 160 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ITGADQ13349 1161 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 C1DQ13901 141 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 ACKR1Q16570 336 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 GTF2IRD2BQ6EKJ0 949 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 FAM180AQ6UWF9 173 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 GTF2IRD2Q86UP8 949 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ZNF519Q8TB69 540 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ZPLD1Q8TCW7 415 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 WDYHV1Q96HA8 205 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 LRR1Q96L50 414 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 UCN2Q96RP3 112 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 DDOQ99489 341 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 MRPS18AQ9NVS2 196 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 CNOT2Q9NZN8 540 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 H2AFY2Q9P0M6 372 aaPredicted RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 B3GAT1Q9P2W7 334 aa13.66□□□□□ -0.22
SS18-215ENST00000580642 ZNF346Q9UL40 294 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 MCTS1Q9ULC4 181 aaKnown RBP13.66□□□□□ -0.22
SS18-215ENST00000580642 CELSR3Q9NYQ7 3312 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 IGKV3D-15A0A087WSY6 115 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 EFCAB10A6NFE3 127 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC22A31A6NKX4 558 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 NPIPA5E9PKD4 350 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 SLC1A7O00341 560 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 GPR171O14626 319 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 CXCL13O43927 109 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 CYTIPO60759 359 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 BCL10O95999 233 aa13.65□□□□□ -0.22
SS18-215ENST00000580642 OPN1LWP04000 364 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms