RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GUCA1BQ9UMX6 200 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 TANC2Q9HCD6 1990 aa13.49□□□□□ -0.25
VPS53-218ENST00000575207 RNASEK-C17orf49H0YIS7 233 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 TM9SF1O15321 606 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 HLA-HP01893 362 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 UROSP10746 265 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 UQCRC2P22695 453 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 FNTAP49354 379 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 GSG1Q2KHT4 349 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 NIPAL3Q6P499 406 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 CREB3L2Q70SY1 520 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 GRINAQ7Z429 371 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 DDIASQ8IXT1 998 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 CPEB3Q8NE35 698 aaKnown RBP13.48□□□□□ -0.25
VPS53-218ENST00000575207 CDKL2Q92772 493 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 PHF21BQ96EK2 531 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 THOC1Q96FV9 657 aaKnown RBP13.48□□□□□ -0.25
VPS53-218ENST00000575207 STACQ99469 402 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 ACPTQ9BZG2 426 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 PIGUQ9H490 435 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 CNTD2Q9H8S5 307 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 ACOXLQ9NUZ1 547 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 PCDHGB4Q9UN71 923 aa13.48□□□□□ -0.25
VPS53-218ENST00000575207 MANBAO00462 879 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 MT-ND5P03915 603 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 CCNA2P20248 432 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 CPT2P23786 658 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 FASTKD3Q14CZ7 662 aaKnown RBP13.47□□□□□ -0.25
VPS53-218ENST00000575207 MOGQ16653 247 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 TTMPQ5BVD1 217 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 ZNF774Q6NX45 483 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 TMEM99Q8N816 258 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 PAPD5Q8NDF8 572 aaKnown RBP13.47□□□□□ -0.25
VPS53-218ENST00000575207 ZNF563Q8TA94 476 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 ZNF837Q96EG3 531 aaPredicted RBP13.47□□□□□ -0.25
VPS53-218ENST00000575207 SSBP3Q9BWW4 388 aaPredicted RBP13.47□□□□□ -0.25
VPS53-218ENST00000575207 DCAF16Q9NXF7 216 aa13.47□□□□□ -0.25
VPS53-218ENST00000575207 AQP7P3A6NL99 342 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 PPP6CO00743 305 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 IGHV1-46P01743 117 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 KRT6AP02538 564 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 KRT6BP04259 564 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 WNT2P09544 360 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 UBTFL6P0CB48 400 aaPredicted RBP13.46□□□□□ -0.25
VPS53-218ENST00000575207 OR8G3PP0DMU2 310 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 SPRP35270 261 aaPredicted RBP13.46□□□□□ -0.25
VPS53-218ENST00000575207 KRT6CP48668 564 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 FGF12P61328 243 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 DCST2Q5T1A1 773 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 PDZK1Q5T2W1 519 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 KLHDC1Q8N7A1 406 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 GATAD2BQ8WXI9 593 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 DDIT4LQ96D03 193 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 DCLRE1CQ96SD1 692 aaKnown RBP13.46□□□□□ -0.25
VPS53-218ENST00000575207 NANOGQ9H9S0 305 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 GPR35Q9HC97 309 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 SIRT5Q9NXA8 310 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 VPREB3Q9UKI3 123 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 SIGLEC9Q9Y336 463 aa13.46□□□□□ -0.25
VPS53-218ENST00000575207 PDPK1O15530 556 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 AKR7A3O95154 331 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 CSTAP01040 98 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 CD79AP11912 226 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 LMO1P25800 156 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 LSP1P33241 339 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 PTDSS1P48651 473 aaKnown RBP13.45□□□□□ -0.26
VPS53-218ENST00000575207 ZNF81P51508 661 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 ARL4CP56559 192 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 BTKQ06187 659 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 PDIA2Q13087 525 aaKnown RBP13.45□□□□□ -0.26
VPS53-218ENST00000575207 CEACAM16Q2WEN9 425 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 COX20Q5RI15 118 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 RPS27LQ71UM5 84 aaKnown RBP13.45□□□□□ -0.26
VPS53-218ENST00000575207 NDUFA11Q86Y39 141 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 EPHX4Q8IUS5 362 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 Q8NFD4 153 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 ZNF519Q8TB69 540 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 PMM1Q92871 262 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 TRIM15Q9C019 465 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 ABCA13Q86UQ4 5058 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 HECTD4Q9Y4D8 3996 aa13.45□□□□□ -0.26
VPS53-218ENST00000575207 CENPVL1A0A0U1RR11 272 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 CENPVL3A0A0U1RRI6 287 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 ADARB2-AS1A8MUL3 147 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZNF99A8MXY4 864 aaPredicted RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 STX16-NPEPL1H3BU86 382 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 STX16O14662 325 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZNF208O43345 1280 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 SLC43A1O75387 559 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 OR4F21O95013 312 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 HMGN2P05204 90 aaKnown RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 TSPAN8P19075 237 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 RPL4P36578 427 aaKnown RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 ETV4P43268 484 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 P2RY4P51582 365 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 PCBP3P57721 371 aaKnown RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 BTG1P62324 171 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 LASP1Q14847 261 aaKnown RBP13.44□□□□□ -0.26
VPS53-218ENST00000575207 ZMYND11Q15326 602 aa13.44□□□□□ -0.26
VPS53-218ENST00000575207 TMEM225Q6GV28 225 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms