RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PNPT1Q8TCS8 783 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 ZHX1-C8orf76Q96EF9 292 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ADAD1Q96M93 576 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 SORCS2Q96PQ0 1159 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 WDR55Q9H6Y2 383 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 MTHFD2LQ9H903 347 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 SEC61A2Q9H9S3 476 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 MOV10Q9HCE1 1003 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 GID8Q9NWU2 228 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 TMEM160Q9NX00 188 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 NKX1-2Q9UD57 310 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 RAB26Q9ULW5 256 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 SLC9A8Q9Y2E8 581 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 AP4S1Q9Y587 144 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ZNF503-AS2A6NEH8 195 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 AQP7P3A6NL99 342 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 TMEM229AB2RXF0 380 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 FTCDNL1E5RQL4 147 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 KPNA4O00629 521 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 KLF11O14901 512 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 PHF1O43189 567 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 FRS3O43559 492 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 DENRO43583 198 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 EIF1BO60739 113 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 SNNO75324 88 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 UPK3AO75631 287 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 TRMUO75648 421 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 F12P00748 615 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 TFPTP0C1Z6 253 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ETFAP13804 333 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ANPEPP15144 967 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 SLC25A16P16260 332 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ZNF16P17020 682 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 HOXB9P17482 250 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 IGFBP5P24593 272 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 EPHA3P29320 983 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 CALCRP30988 508 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 APOBEC3AP31941 199 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 CHI3L1P36222 383 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 SELENOPP49908 381 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 MAP2K6P52564 334 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 EFNA4P52798 201 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ARFIP2P53365 341 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 DSCR9P59020 149 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 SRSF2Q01130 221 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 EGR4Q05215 589 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 RAB35Q15286 201 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 OR7A5Q15622 319 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 KRTAP24-1Q3LI83 254 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 GTDC1Q4AE62 458 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 OTUD3Q5T2D3 398 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 TMEM53Q6P2H8 277 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 DHRS4L2Q6PKH6 230 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 CLEC2AQ6UVW9 174 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 NANOGNBQ7Z5D8 188 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 COMTD1Q86VU5 262 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 CLIP4Q8N3C7 705 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ANKRD42Q8N9B4 389 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 VPS37AQ8NEZ2 397 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 OR1K1Q8NGR3 316 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 MGARPQ8TDB4 240 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 SLC38A5Q8WUX1 472 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 FAM168AQ92567 244 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 PROX1Q92786 737 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 BCL2L2Q92843 193 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 PMM1Q92871 262 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 VPS33AQ96AX1 596 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 C3orf49Q96BT1 292 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 DDIT4LQ96D03 193 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 MAELQ96JY0 434 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 PANX1Q96RD7 426 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 NAA11Q9BSU3 229 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 SOX7Q9BT81 388 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 PTDSS2Q9BVG9 487 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 SF3B5Q9BWJ5 86 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 PRR14Q9BWN1 585 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 PIF1Q9H611 641 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 TMEM165Q9HC07 324 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 CRNNQ9UBG3 495 aaPredicted RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 SEC14L4Q9UDX3 406 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 POU2F3Q9UKI9 436 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 MOKQ9UQ07 419 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 AMDHD2Q9Y303 409 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 FAM32AQ9Y421 112 aaKnown RBP5.85□□□□□ -1.47
VPS53-213ENST00000572334 ATP23Q9Y6H3 246 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 ARHGAP32A7KAX9 2087 aa5.85□□□□□ -1.47
VPS53-213ENST00000572334 TENM1Q9UKZ4 2725 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ARPC4-TTLL3A0A0A6YYG9 625 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 IGHV4-61A0A0C4DH41 118 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 TMEM129A0AVI4 362 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 H0YJX3 145 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 NR5A2O00482 541 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ENTPD5O75356 428 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 ZNF432O94892 652 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 LGI1O95970 557 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 IGLV1-44P01699 117 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 DBIP07108 87 aaKnown RBP5.84□□□□□ -1.47
VPS53-213ENST00000572334 CELA3BP08861 270 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 NUDT7P0C024 238 aa5.84□□□□□ -1.47
VPS53-213ENST00000572334 CECR9P0C854 216 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms