RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GP6Q9HCN6 339 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 NANSQ9NR45 359 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 MCTS1Q9ULC4 181 aaKnown RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 OAZ3Q9UMX2 235 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 CORINQ9Y5Q5 1042 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 PKDREJQ9NTG1 2253 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 BAHCC1Q9P281 2608 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 FBN2P35556 2912 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 A0A1B0GUH1 482 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 EFCAB9A8MZ26 197 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 PDLIM1O00151 329 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 DLGAP1O14490 977 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 OR10H3O60404 316 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 CCNB2O95067 398 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 SYNGR4O95473 234 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 IL18BPO95998 194 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 IGHMP01871 453 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 CRHP06850 196 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 YES1P07947 543 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 TMIGD3P0DMS9 266 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 FCGR2AP12318 317 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 EPHA2P29317 976 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 SLC9A3P48764 834 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 FOXG1P55316 489 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 RUNX1T1Q06455 604 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 LGALS3BPQ08380 585 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 PUDPQ08623 228 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 PMS2P3Q13401 168 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 MFSD13AQ14CX5 517 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 RNPS1Q15287 305 aaKnown RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 PHYHD1Q5SRE7 291 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZNF362Q5T0B9 420 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 ARMC4Q5T2S8 1044 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 KDM4DQ6B0I6 523 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZNF474Q6S9Z5 364 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 KLHL17Q6TDP4 642 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZNF620Q6ZNG0 422 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 FAM214BQ7L5A3 538 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 PXKQ7Z7A4 578 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 PQLC1Q8N2U9 271 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 SLC43A2Q8N370 569 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 AQP11Q8NBQ7 271 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 OR51A7Q8NH64 312 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 OR5K1Q8NHB7 308 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZNF519Q8TB69 540 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 GIPC3Q8TF64 312 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 TMEM45BQ96B21 275 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 ZFP3Q96NJ6 502 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 OXGR1Q96P68 337 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 GPX7Q96SL4 187 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 SLC29A1Q99808 456 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 EGLN3Q9H6Z9 239 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 YY1AP1Q9H869 796 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 SMURF2Q9HAU4 748 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 TIGARQ9NQ88 270 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 MED29Q9NX70 200 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 PDP1Q9P0J1 537 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 IL20RAQ9UHF4 553 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 FOXD3Q9UJU5 478 aaPredicted RBP8.23□□□□□ -1.09
VPS35-211ENST00000569950 RASD1Q9Y272 281 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 SLC5A6Q9Y289 635 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 TMEM5Q9Y2B1 443 aa8.23□□□□□ -1.09
VPS35-211ENST00000569950 UNC79Q9P2D8 2635 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 CADP27708 2225 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 UNC119BA6NIH7 251 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NPIPB13A6NJU9 1138 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NPIPB4C9JG80 1138 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 BHLHE40O14503 412 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 IMPA2O14732 288 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 MGRN1O60291 552 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 MITFO75030 526 aaPredicted RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 VAMP5O95183 116 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ADAP00813 363 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 F13BP05160 661 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ADORA3P0DMS8 318 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 FCGR1AP12314 374 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 POU2F1P14859 743 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ANPEPP15144 967 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 CTSSP25774 331 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 CCKARP32238 428 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 IFNA8P32881 189 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OPRM1P35372 400 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OR3A2P47893 321 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 SELENOPP49908 381 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 SIRPAP78324 504 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 POU3F1Q03052 451 aaPredicted RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 DBPQ10586 325 aaPredicted RBP8.22□□□□□ -1.09
VPS35-211ENST00000569950 RCN1Q15293 331 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 SF3B4Q15427 424 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS35-211ENST00000569950 ZBED5Q49AG3 693 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OR2A2Q6IF42 318 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 TFAP2EQ6VUC0 442 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 RASSF6Q6ZTQ3 369 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 NANOGNBQ7Z5D8 188 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 OAFQ86UD1 273 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 IGFN1Q86VF2 1251 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 LINC00471Q8N535 108 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 C10orf53Q8N6V4 93 aa8.22□□□□□ -1.09
VPS35-211ENST00000569950 ACBD4Q8NC06 268 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms