RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TLE4Q04727 773 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 TRIM25Q14258 630 aaKnown RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 MELKQ14680 651 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 LAPTM4AQ15012 233 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SFRP5Q5T4F7 317 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 EEF1A1P5Q5VTE0 462 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 FBXW9Q5XUX1 488 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 GTF2IRD2BQ6EKJ0 949 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 NIPAL3Q6P499 406 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 TTC33Q6PID6 262 aaPredicted RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 CASP12Q6UXS9 341 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 Q6ZT83 130 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 FKBP9P1Q75LS8 142 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 TMEM179BQ7Z7N9 219 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 GTF2IRD2Q86UP8 949 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 NRMQ8IXM6 262 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 ADGRG5Q8IZF4 528 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 CLDN22Q8N7P3 220 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 WDR31Q8NA23 367 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 ADPRHL1Q8NDY3 354 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 OR5J2Q8NH18 312 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SLC7A13Q8TCU3 470 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 LIPHQ8WWY8 451 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 HTRA1Q92743 480 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SLCO4A1Q96BD0 722 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 CCDC124Q96CT7 223 aaKnown RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 C14orf79Q96F83 325 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 MPP4Q96JB8 637 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 NSMCE2Q96MF7 247 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 OXGR1Q96P68 337 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 OR2M2Q96R28 347 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SF3B5Q9BWJ5 86 aaKnown RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 TAPBPLQ9BX59 468 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 FANCFQ9NPI8 374 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 ELOVL5Q9NYP7 299 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SELENONQ9NZV5 590 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 ACTR3BQ9P1U1 418 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 MAGEL2Q9UJ55 1249 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 FOXD3Q9UJU5 478 aaPredicted RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 PLCE1Q9P212 2302 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 TRAV27A0A087WT01 109 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 IGKV1D-43A0A0B4J1Z2 117 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 TUBAL3A6NHL2 446 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 A6NNC1 897 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 C16orf97H3BN30 126 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 OR2T1O43869 369 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 F13BP05160 661 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 EPXP11678 715 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 RBM34P42696 430 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 OMPP47874 163 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 RPS4XP62701 263 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 CBX1P83916 185 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 PRKCDQ05655 676 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 RPL18Q07020 188 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 ZP4Q12836 540 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 FAPQ12884 760 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 DAZAP2Q15038 168 aaPredicted RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 TAB1Q15750 504 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 GABRA6Q16445 453 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 TMEM225Q6GV28 225 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 BEND4Q6ZU67 534 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 AAED1Q7RTV5 226 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 IGFN1Q86VF2 1251 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 OR4C15Q8NGM1 316 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 OR13C2Q8NGS9 318 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 OR52J3Q8NH60 311 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 LILRB1Q8NHL6 650 aaPredicted RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 APH1AQ96BI3 265 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 ZHX1-C8orf76Q96EF9 292 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 SGTBQ96EQ0 304 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 ALKBH3Q96Q83 286 aaPredicted RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 TNFRSF13CQ96RJ3 184 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 SEPHS2Q99611 448 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 BTBD10Q9BSF8 475 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 SLC19A3Q9BZV2 496 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 POLR2J2Q9GZM3 115 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 ACTR6Q9GZN1 396 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 POLR2J3Q9H1A7 115 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 HEATR1Q9H583 2144 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 FKRPQ9H9S5 495 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 MCCC2Q9HCC0 563 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 MALT1Q9UDY8 824 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 KCNN3Q9UGI6 736 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 SLC7A8Q9UHI5 535 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 RPS6KA6Q9UK32 745 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 PRPF19Q9UMS4 504 aaKnown RBP8.1□□□□□ -1.11
VPS35-206ENST00000565228 RASD1Q9Y272 281 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 B3GALT5Q9Y2C3 310 aa8.1□□□□□ -1.11
VPS35-206ENST00000565228 SLC35F4A4IF30 521 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 PTP4A3O75365 173 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 MRPL33O75394 65 aaKnown RBP8.09□□□□□ -1.11
VPS35-206ENST00000565228 RAD51DO75771 328 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SERPINI2O75830 405 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 SEC14L2O76054 403 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 ADORA3P0DMS8 318 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 THRBP10828 461 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 IFI30P13284 250 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 IFNGR1P15260 489 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 RHCEP18577 417 aa8.09□□□□□ -1.11
VPS35-206ENST00000565228 CRYGSP22914 178 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms