RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TMEM43Q9BTV4 400 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 TMEM120AQ9BXJ8 343 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 PCDHAC1Q9H158 963 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 NANOGQ9H9S0 305 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 TMEM27Q9HBJ8 222 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 CBLN4Q9NTU7 201 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 FAIMQ9NVQ4 179 aa12.97□□□□□ -0.33
CLN3-213ENST00000565047 ZNF503-AS2A6NEH8 195 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 ZNF587BE7ETH6 402 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 LRRN3E7EW58 273 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 OPN1SWP03999 348 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 HOXB1P14653 301 aaPredicted RBP12.96□□□□□ -0.33
CLN3-213ENST00000565047 CDH2P19022 906 aaPredicted RBP12.96□□□□□ -0.33
CLN3-213ENST00000565047 PCGF2P35227 344 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 ROR2Q01974 943 aaKnown RBP12.96□□□□□ -0.33
CLN3-213ENST00000565047 NFYCQ13952 458 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 SWI5Q1ZZU3 235 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 C3orf36Q3SXR2 165 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 MUC15Q8N387 334 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 FAM169BQ8N8A8 192 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 SCAIQ8N9R8 606 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 OR10A6Q8NH74 314 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 GTPBP3Q969Y2 492 aaKnown RBP12.96□□□□□ -0.33
CLN3-213ENST00000565047 ZNF426Q9BUY5 554 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 CACNG6Q9BXT2 260 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 GPR35Q9HC97 309 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 SAR1AQ9NR31 198 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 CORINQ9Y5Q5 1042 aa12.96□□□□□ -0.33
CLN3-213ENST00000565047 CUBNO60494 3623 aa12.96□□□□□ -0.34
CLN3-213ENST00000565047 TLN2Q9Y4G6 2542 aa12.96□□□□□ -0.34
CLN3-213ENST00000565047 RNF223E7ERA6 249 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 ATP6V1G2-DDX39BF2Z307 99 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 H7C417 338 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 WNT11O96014 354 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 IGKV3-15P01624 115 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 CBLP22681 906 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 ARF1P84077 181 aaKnown RBP12.95□□□□□ -0.34
CLN3-213ENST00000565047 KLF10Q13118 480 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 MFSD13AQ14CX5 517 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 CYP51A1Q16850 503 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 VMACQ2NL98 169 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 TRMT5Q32P41 509 aaKnown RBP12.95□□□□□ -0.34
CLN3-213ENST00000565047 RABL3Q5HYI8 236 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 COQ5Q5HYK3 327 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 ANKRD16Q6P6B7 361 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 RANBP3LQ86VV4 465 aaPredicted RBP12.95□□□□□ -0.34
CLN3-213ENST00000565047 SLC30A8Q8IWU4 369 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 C20orf196Q8IYI0 205 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 OR10H5Q8NGA6 315 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 TXNDC15Q96J42 360 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 MCHR1Q99705 422 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 REG4Q9BYZ8 158 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 ALG2Q9H553 416 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 CCDC134Q9H6E4 229 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 SEC61A2Q9H9S3 476 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 FGFR1OP2Q9NVK5 253 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 MRPL39Q9NYK5 338 aaKnown RBP12.95□□□□□ -0.34
CLN3-213ENST00000565047 MOKQ9UQ07 419 aa12.95□□□□□ -0.34
CLN3-213ENST00000565047 ALPK2Q86TB3 2170 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 SVEP1Q4LDE5 3571 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 PLPP3O14495 311 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 CHP2O43745 196 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 SLC43A1O75387 559 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 PAX7P23759 505 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 APOBEC3AP31941 199 aaPredicted RBP12.94□□□□□ -0.34
CLN3-213ENST00000565047 FABP6P51161 128 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 SH3BGRP55822 239 aaPredicted RBP12.94□□□□□ -0.34
CLN3-213ENST00000565047 TUBA1BP68363 451 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 TUBA4AP68366 448 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 VEZF1Q14119 521 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 ENTPD8Q5MY95 495 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 TUBA1AQ71U36 451 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 ZNF627Q7L945 461 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 PATL1Q86TB9 770 aaKnown RBP12.94□□□□□ -0.34
CLN3-213ENST00000565047 MYPOPQ86VE0 399 aaPredicted RBP12.94□□□□□ -0.34
CLN3-213ENST00000565047 MAPK1IP1LQ8NDC0 245 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 OR8J3Q8NGG0 315 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 LRRC58Q96CX6 371 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 LRR1Q96L50 414 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 ZNF75AQ96N20 296 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 ZNF583Q96ND8 569 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 SLC38A2Q96QD8 506 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 EPYCQ99645 322 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 PRSS27Q9BQR3 290 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 KATNB1Q9BVA0 655 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 FKRPQ9H9S5 495 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 BARX1Q9HBU1 254 aaPredicted RBP12.94□□□□□ -0.34
CLN3-213ENST00000565047 CRLF2Q9HC73 371 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 B3GNT2Q9NY97 397 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 USP22Q9UPT9 525 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 CR1P17927 2039 aa12.94□□□□□ -0.34
CLN3-213ENST00000565047 IGHV4-30-2A0A087WSY4 118 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 A0A096LPE4 126 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 A0A1W2PPZ6 126 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 SLC35F4A4IF30 521 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 KRT33AO76009 404 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 MT-ATP6P00846 226 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 GTF2E2P29084 291 aaKnown RBP12.93□□□□□ -0.34
CLN3-213ENST00000565047 CALCRP30988 508 aa12.93□□□□□ -0.34
CLN3-213ENST00000565047 ARFIP2P53365 341 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms