RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RAMP3O60896 148 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 MMP23AO75900 390 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 STAMBPO95630 424 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF19P17023 458 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 ATP6V1B2P21281 511 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 CCR1P32246 355 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 RFC4P35249 363 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 RBMXP38159 391 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 QARSP47897 775 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 ATP1B3P54709 279 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 HMGN5P82970 282 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 GPRC6AQ5T6X5 926 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 OR4K14Q8NGD5 310 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 OR8J1Q8NGP2 316 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 SHC3Q92529 594 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 FGF11Q92914 225 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 ARHGDIGQ99819 225 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 POLR2J2Q9GZM3 115 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 POLR2J3Q9H1A7 115 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 OR51J1Q9H342 316 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 SUDS3Q9H7L9 328 aaPredicted RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 YY1AP1Q9H869 796 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 FOLH1BQ9HBA9 442 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 MCCC2Q9HCC0 563 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 SH2D2AQ9NP31 389 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 BFARQ9NZS9 450 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 STAP1Q9ULZ2 295 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 RPL36Q9Y3U8 105 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 V9GY05 133 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 MAP3K5Q99683 1374 aa3.31□□□□□ -1.88
LINC00560-201ENST00000564593 MARF1Q9Y4F3 1742 aaKnown RBP3.31□□□□□ -1.88
LINC00560-201ENST00000564593 IGKV1D-8A0A087WSZ0 117 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 A0A0J9YXY3 114 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 IQANK1A0A1B0GTG1 560 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 TCRBV9S1A1TA0A576 114 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 A8MXQ7 604 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 NBR2O15453 112 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 MBTPS2O43462 519 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 TIMM8AO60220 97 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 B4GALT2O60909 372 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 BBOX1O75936 387 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 LGI1O95970 557 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 OPN1MWP04001 364 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 KRTAP1-4P0C5Y4 121 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 OPN1MW2P0DN77 364 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 OPN1MW3P0DN78 364 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 SHMT2P34897 504 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 UGT1A5P35504 534 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 DUSP3P51452 185 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 ASPHQ12797 758 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 ORC2Q13416 577 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 KLHL38Q2WGJ6 581 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 KRT71Q3SY84 523 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 SAMD4BQ5PRF9 694 aaKnown RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 OR52E8Q6IFG1 317 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 HSDL2Q6YN16 418 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 PGAP1Q75T13 922 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 DHDDSQ86SQ9 333 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 ERI1Q8IV48 349 aaKnown RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 OR52H1Q8NGJ2 320 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 SH3TC1Q8TE82 1336 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 C7orf33Q8WU49 177 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 CHCHD10Q8WYQ3 142 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 C10orf35Q96D05 121 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 CXorf40BQ96DE9 158 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 PAGE5Q96GU1 130 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 GCOM2Q9BZD3 368 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 SELENOIQ9C0D9 397 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 THSD7BQ9C0I4 1608 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 NARFLQ9H6Q4 476 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 FN3KRPQ9HA64 309 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 THUMPD1Q9NXG2 353 aaKnown RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 KIF25Q9UIL4 384 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 NAP1L2Q9ULW6 460 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 PIGLQ9Y2B2 252 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF256Q9Y2P7 627 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 ATP6V1DQ9Y5K8 247 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 CAMTA1Q9Y6Y1 1673 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 LAMB4A4D0S4 1761 aa3.3□□□□□ -1.88
LINC00560-201ENST00000564593 PARP4Q9UKK3 1724 aaKnown RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 MED1Q15648 1581 aaPredicted RBP3.3□□□□□ -1.88
LINC00560-201ENST00000564593 A0A1B0GVL5 298 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 FAM231BA6NCW3 169 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SNTNA6NMZ2 147 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 FCMRO60667 390 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 OXSR1O95747 527 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SSR1P43307 286 aaKnown RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 TIMM10P62072 90 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 OXA1LQ15070 435 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 DUSP7Q16829 419 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 OR2G6Q5TZ20 316 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 C1orf146Q5VVC0 180 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 C11orf71Q6IPW1 123 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 UTS2BQ765I0 119 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 MAGEE2Q8TD90 523 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 SETD7Q8WTS6 366 aaKnown RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 DNAJA4Q8WW22 397 aaPredicted RBP3.29□□□□□ -1.88
LINC00560-201ENST00000564593 DCUN1D4Q92564 292 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 MTMR9Q96QG7 549 aa3.29□□□□□ -1.88
LINC00560-201ENST00000564593 HIST1H4GQ99525 98 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms