RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TCF7L1Q9HCS4 588 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 MKKSQ9NPJ1 570 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 KLHDC2Q9Y2U9 406 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 NOSIPQ9Y314 301 aaKnown RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 KCNMB2Q9Y691 235 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 H0YC42 278 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 PDCD5O14737 125 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 HCRTR1O43613 425 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RASGRP1O95267 797 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RLN1P04808 185 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 CTSBP07858 339 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 HOXD4P09016 255 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 MAP3K8P41279 467 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 GGTLC2Q14390 218 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 YOD1Q5VVQ6 348 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 LEG1Q6P5S2 330 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 STAC2Q6ZMT1 411 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 OR6V1Q8N148 313 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 MYADMQ96S97 322 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 EMC3Q9P0I2 261 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 CHURC1-FNTBB4DL54 471 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 MCRIP1C9JLW8 97 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 H7C1C5 153 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RDH16O75452 317 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ZNF10P21506 573 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 ITPKBP27987 946 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ART1P52961 327 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TAS2R20P59543 309 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 B2MP61769 119 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 LCN6P62502 163 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 GPR18Q14330 331 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 MELKQ14680 651 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ELFN2Q5R3F8 820 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 C1orf53Q5VUE5 145 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TMEM81Q6P7N7 255 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ULK3Q6PHR2 472 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RTL10Q7L3V2 364 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ZNF761Q86XN6 746 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 GATSQ8NAP1 163 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 OR4D10Q8NGI6 311 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 RNF166Q96A37 237 aaPredicted RBP12.07□□□□□ -0.48
CLN3-210ENST00000563874 SLC22A18Q96BI1 424 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ZFYVE21Q9BQ24 234 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ALG12Q9BV10 488 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 TAS2R5Q9NYW4 299 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 ACTR10Q9NZ32 417 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 SPACA6W5XKT8 324 aa12.07□□□□□ -0.48
CLN3-210ENST00000563874 HEATR5AQ86XA9 2040 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 FXYD6-FXYD2A0A087WZ82 144 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 TCRBV16S1A1N1A0A5B0 115 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 NAP1L6A6NFF2 107 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 GPRIN2O60269 458 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 VSIG10L2P0DP72 767 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 BTF3P20290 206 aaKnown RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 GAS6Q14393 721 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 DEFB110Q30KQ9 67 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ZNF626Q68DY1 528 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 NUDT18Q6ZVK8 323 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 C10orf53Q8N6V4 93 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 OR10AC1Q8NH08 325 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ZDHHC1Q8WTX9 485 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 SPACA7Q96KW9 195 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 REG4Q9BYZ8 158 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 PLA2G2FQ9BZM2 168 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 FXYD6Q9H0Q3 95 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 SRA1Q9HD15 236 aaKnown RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 FBXL21Q9UKT6 434 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 TVP23AA6NH52 213 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 H3BUI4 141 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ZNF749O43361 778 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 SUSD5O60279 629 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ITGA10O75578 1167 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 NKX2-2O95096 273 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 GIPP09681 153 aaPredicted RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 RBM34P42696 430 aaKnown RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 CDKN2AP42771 156 aaKnown RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 ADPRHP54922 357 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 H2BFSP57053 126 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 PPP1CAP62136 330 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 TMEM31Q5JXX7 168 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 LIPNQ5VXI9 398 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 RNF44Q7L0R7 432 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 LURAP1LQ8IV03 231 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ANKRD9Q96BM1 317 aaPredicted RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 HAVCR1Q96D42 359 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 LCORQ96JN0 433 aaPredicted RBP12.06□□□□□ -0.48
CLN3-210ENST00000563874 KLHL15Q96M94 604 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 MFRPQ9BY79 579 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ULBP3Q9BZM4 244 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 ARL6Q9H0F7 186 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 KCNK15Q9H427 330 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 IL23AQ9NPF7 189 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 CD93Q9NPY3 652 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 LRIT1Q9P2V4 623 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 TRANK1O15050 2925 aa12.06□□□□□ -0.48
CLN3-210ENST00000563874 AK1P00568 194 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 LPLP06858 475 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 NMBP08949 121 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 AQP2P41181 271 aa12.05□□□□□ -0.48
CLN3-210ENST00000563874 KIR2DS3Q14952 304 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms