RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CHMP1BQ7LBR1 199 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 TSPYL5Q86VY4 417 aaPredicted RBP10.56□□□□□ -0.72
LDLR-212ENST00000560467 CDC20BQ86Y33 519 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 C8orf59Q8N0T1 100 aaPredicted RBP10.56□□□□□ -0.72
LDLR-212ENST00000560467 OR6S1Q8NH40 331 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 PFN4Q8NHR9 129 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 SLC25A36Q96CQ1 311 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 NIPSNAP1Q9BPW8 284 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 NAA11Q9BSU3 229 aaPredicted RBP10.56□□□□□ -0.72
LDLR-212ENST00000560467 GABARAPL3Q9BY60 117 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 FKRPQ9H9S5 495 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 PROK2Q9HC23 129 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 RASSF1Q9NS23 344 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 FAM118AQ9NWS6 357 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 BAIAP2Q9UQB8 552 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 LRCH1Q9Y2L9 728 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 HDGFL3Q9Y3E1 203 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 AP4B1Q9Y6B7 739 aa10.56□□□□□ -0.72
LDLR-212ENST00000560467 TMEM72A0PK05 275 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SNTNA6NMZ2 147 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 H3BML4 177 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SLC16A6O15403 523 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 ZIC3O60481 467 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 WDR1O75083 606 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 OR7A10O76100 309 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 CHMP24386 653 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SLC6A6P31641 620 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 RPS5P46782 204 aaKnown RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 GSSP48637 474 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 RAC1P63000 192 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 ADAM8P78325 824 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SLC35A1P78382 337 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 PMS2P3Q13401 168 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 HYAL4Q2M3T9 481 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 TMEM176BQ3YBM2 270 aaPredicted RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 SLC36A3Q495N2 470 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SYT14P1Q58G82 188 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SLC27A4Q6P1M0 643 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SMARCD3Q6STE5 483 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 KLHL17Q6TDP4 642 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 WDR88Q6ZMY6 472 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SEM1Q6ZVN7 128 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 NANOGNBQ7Z5D8 188 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 YRDCQ86U90 279 aaKnown RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 P3H2Q8IVL5 708 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 CLDN22Q8N7P3 220 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 RELL2Q8NC24 303 aaPredicted RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 FAM83FQ8NEG4 500 aaPredicted RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 OR2T33Q8NG76 320 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 OR51A7Q8NH64 312 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 MFSD8Q8NHS3 518 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 FANK1Q8TC84 345 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 TFAP2CQ92754 450 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 SARAFQ96BY9 339 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 Q96MT0 163 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 ZNF570Q96NI8 536 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 OR5B2Q96R09 309 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 OR2B2Q9GZK3 357 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 MEPEQ9NQ76 525 aaPredicted RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 TMEFF2Q9UIK5 374 aaPredicted RBP10.55□□□□□ -0.72
LDLR-212ENST00000560467 CDH10Q9Y6N8 788 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 JMJD1CQ15652 2540 aa10.55□□□□□ -0.72
LDLR-212ENST00000560467 TRGV5A0A0B4J1U4 118 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 OR2M5A3KFT3 312 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 A6NNC1 897 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 KDM4EB2RXH2 506 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 BLOC1S5-TXNDC5H3BN57 136 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 SULT2B1O00204 365 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 DENRO43583 198 aaKnown RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 PIP5K1CO60331 668 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 EIF1BO60739 113 aaKnown RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 MITFO75030 526 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 NDUFB2O95178 105 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 NTN1O95631 604 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 IFNGP01579 166 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 HPNP05981 417 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 RFPL3SP0C7P2 107 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 PEPDP12955 493 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 PTNP21246 168 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 GIPRP48546 466 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 OR2B6P58173 313 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 RPS3AP61247 264 aaKnown RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 IL5RAQ01344 420 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 KEAP1Q14145 624 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 GINS1Q14691 196 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 PTGES3Q15185 160 aaKnown RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 ZNF74Q16587 644 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 RIPPLY2Q5TAB7 128 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 PAMR1Q6UXH9 720 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 Q71RC1 249 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 MEIOBQ8N635 442 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 NAXEQ8NCW5 288 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 WFDC11Q8NEX6 87 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 OR5M1Q8NGP8 315 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 TRUB1Q8WWH5 349 aaKnown RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 SMPDL3BQ92485 455 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 NTNG2Q96CW9 530 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 KTI12Q96EK9 354 aaPredicted RBP10.54□□□□□ -0.72
LDLR-212ENST00000560467 CNBD2Q96M20 576 aa10.54□□□□□ -0.72
LDLR-212ENST00000560467 SMR3AQ99954 134 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms