RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NANOS3P60323 173 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 DBPQ10586 325 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 COL9A2Q14055 689 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 LINC01590Q5TEZ4 76 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 FCRL6Q6DN72 434 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 GSG1LQ6UXU4 331 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 DGLUCYQ7Z3D6 616 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 SERPINA12Q8IW75 414 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 PDZD9Q8IXQ8 264 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF595Q8IYB9 648 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 SDR16C5Q8N3Y7 309 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF614Q8N883 585 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR51L1Q8NGJ5 315 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR6K6Q8NGW6 343 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF296Q8WUU4 475 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ASB12Q8WXK4 309 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ST8SIA4Q92187 359 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 FAM131CQ96AQ9 280 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 PELOQ9BRX2 385 aaKnown RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 G6PC3Q9BUM1 346 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ALX4Q9H161 411 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-231ENST00000557433 ACTR10Q9NZ32 417 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 CYB5R1Q9UHQ9 305 aa14.88□□□□□ -0.03
SHMT2-231ENST00000557433 OR6C68A6NDL8 312 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 CBX7O95931 251 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 MELTFP08582 738 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 RPA2P15927 270 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 ITGB8P26012 769 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 UBXN2BQ14CS0 331 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 TOMM20Q15388 145 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 TUSC1Q2TAM9 212 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 DEFB115Q30KQ5 88 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 KIRREL2Q6UWL6 708 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 ZAR1Q86SH2 424 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 LRRTM1Q86UE6 522 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 BVESQ8NE79 360 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 OR52R1Q8NGF1 315 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 GCDHQ92947 438 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-231ENST00000557433 ALG12Q9BV10 488 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 TRPV4Q9HBA0 871 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 FGF22Q9HCT0 170 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 SLC17A5Q9NRA2 495 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 STEAP1Q9UHE8 339 aa14.87□□□□□ -0.03
SHMT2-231ENST00000557433 NPIPB9F8W1W9 429 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 PYCARD-AS1I3L0S3 204 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CT62P0C5K7 136 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 RAB38P57729 211 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 SNRPNP63162 240 aaKnown RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 LTBQ06643 244 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ANKRD16Q6P6B7 361 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 PSRC1Q6PGN9 363 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CA13Q8N1Q1 262 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ESX1Q8N693 406 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 OR2AK2Q8NG84 335 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 OR6K3Q8NGY3 331 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 LIPHQ8WWY8 451 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 OIT3Q8WWZ8 545 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 RNF166Q96A37 237 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 GINS4Q9BRT9 223 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CRISPLD2Q9H0B8 497 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 IL23AQ9NPF7 189 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CXXC1Q9P0U4 656 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ADAM18Q9Y3Q7 739 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 TRBV5-7A0A0A0MS05 114 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ANXA2P2A6NMY6 339 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 H0YGG7 62 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 DNAJB6O75190 326 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF254O75437 659 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 APODP05090 189 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ANXA2P07355 339 aaKnown RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 GJA4P35212 333 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CD96P40200 585 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ARF3P61204 181 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 PSG6Q00889 435 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 RUNX3Q13761 415 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ZNF273Q14593 569 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 C2orf27AQ580R0 203 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 EMC4Q5J8M3 183 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 JAZF1Q86VZ6 243 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CACUL1Q86Y37 369 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CDH26Q8IXH8 852 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 OR5M9Q8NGP3 310 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 CCDC74AQ96AQ1 378 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ANKRD9Q96BM1 317 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ORAI1Q96D31 301 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 COMMD4Q9H0A8 199 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 ARL6Q9H0F7 186 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 DNTTIP1Q9H147 329 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 SLC25A32Q9H2D1 315 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 COQ3Q9NZJ6 369 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 UPB1Q9UBR1 384 aa14.86□□□□□ -0.03
SHMT2-231ENST00000557433 TMEM212A6NML5 194 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 TTLL8A6PVC2 850 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 TOR1AO14656 332 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 PHYHO14832 338 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 ARPC5O15511 151 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 ADAM11O75078 769 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 UPK3AO75631 287 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 AKAIN1P0CW23 69 aa14.85□□□□□ -0.03
SHMT2-231ENST00000557433 VSIG10L2P0DP72 767 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms