RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 CTPS2Q9NRF8 586 aa1.87□□□□□ -2.11
SCFD1-216ENST00000555550 FBN1P35555 2871 aaKnown RBP1.86□□□□□ -2.11
SCFD1-216ENST00000555550 A0A087WZY1 265 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 ZNF705GA8MUZ8 300 aaPredicted RBP1.86□□□□□ -2.11
SCFD1-216ENST00000555550 MAPK13O15264 365 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 ZDHHC11BP0C7U3 371 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 GKN3PP0CG01 181 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 IMPDH1P20839 514 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 PCMT1P22061 227 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 P2RY1P47900 373 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 GSSP48637 474 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 ACVR1Q04771 509 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 PDIA2Q13087 525 aaKnown RBP1.86□□□□□ -2.11
SCFD1-216ENST00000555550 SCGB2A2Q13296 93 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 BEND3Q5T5X7 828 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 PLBD1Q6P4A8 553 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 CCDC50Q8IVM0 306 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 ACOT4Q8N9L9 421 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 PDXPQ96GD0 296 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 C4orf36Q96KX1 117 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 OR2A5Q96R48 311 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 ZNF416Q9BWM5 594 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 RAB34Q9BZG1 259 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 SPNS1Q9H2V7 528 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 RWDD1Q9H446 243 aaPredicted RBP1.86□□□□□ -2.11
SCFD1-216ENST00000555550 TMCO1Q9UM00 188 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 MFHAS1Q9Y4C4 1052 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 BRWD3Q6RI45 1802 aa1.86□□□□□ -2.11
SCFD1-216ENST00000555550 KDRP35968 1356 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 FRMPD3Q5JV73 1810 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 IGHV5-51A0A0C4DH38 117 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 LRP5LA4QPB2 252 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 F5H6K3 240 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 INS-IGF2F8WCM5 200 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 OXSR1O95747 527 aaPredicted RBP1.85□□□□□ -2.11
SCFD1-216ENST00000555550 AP2A1O95782 977 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 BGLAPP02818 100 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 CCDC130P13994 396 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 OMGP23515 440 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 RDXP35241 583 aaKnown RBP1.85□□□□□ -2.11
SCFD1-216ENST00000555550 MAP3K8P41279 467 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 RAP1AP62834 184 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 TNFRSF17Q02223 184 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 KLRC3Q07444 240 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 OXA1LQ15070 435 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 SF3A2Q15428 464 aaKnown RBP1.85□□□□□ -2.11
SCFD1-216ENST00000555550 DNLZQ5SXM8 178 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 CES3Q6UWW8 571 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 FAM92BQ6ZTR7 304 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 H2AFVQ71UI9 128 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 TICAM2Q86XR7 235 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 KRTAP13-1Q8IUC0 172 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 SLC38A6Q8IZM9 456 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 FNDC5Q8NAU1 212 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 AURKBQ96GD4 344 aaPredicted RBP1.85□□□□□ -2.11
SCFD1-216ENST00000555550 RNF2Q99496 336 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 GBA3Q9H227 469 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 ELOVL3Q9HB03 270 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 OR10H1Q9Y4A9 318 aa1.85□□□□□ -2.11
SCFD1-216ENST00000555550 SF3B1O75533 1304 aaKnown RBP eCLIP1.85□□□□□ -2.11
SCFD1-216ENST00000555550 IGHV3-66A0A0C4DH42 116 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 CIB4A0PJX0 185 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 ZNF233A6NK53 670 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 A8MXQ7 604 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 RPL36A-HNRNPH2H7BZ11 118 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 PRPSAP2O60256 369 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 SRP72O76094 671 aaKnown RBP1.84□□□□□ -2.11
SCFD1-216ENST00000555550 MFN2O95140 757 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 IGKV1D-16P01601 117 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 HMGB2P26583 209 aaKnown RBP1.84□□□□□ -2.11
SCFD1-216ENST00000555550 MAPK3P27361 379 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-216ENST00000555550 IL12AP29459 219 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 FGF8P55075 233 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-216ENST00000555550 FZD2Q14332 565 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 TTLL9Q3SXZ7 439 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 OR1F12Q8NHA8 337 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 EFHD2Q96C19 240 aaPredicted RBP1.84□□□□□ -2.11
SCFD1-216ENST00000555550 AMDHD1Q96NU7 426 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 GPA33Q99795 319 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 ZNF355PQ9NSJ1 428 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 CALYQ9NYX4 217 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 CD84Q9UIB8 345 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 MMP17Q9ULZ9 603 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 U3KQV3 271 aa1.84□□□□□ -2.11
SCFD1-216ENST00000555550 MN1Q10571 1320 aaPredicted RBP1.84□□□□□ -2.12
SCFD1-216ENST00000555550 FANCIQ9NVI1 1328 aa1.84□□□□□ -2.12
SCFD1-216ENST00000555550 TCRBV9S1A1TA0A576 114 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 CCDC182A6NF36 153 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 A8MUI8 341 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 CLDN3O15551 220 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 RRP8O43159 456 aaKnown RBP1.83□□□□□ -2.12
SCFD1-216ENST00000555550 RBFOX2O43251 390 aaKnown RBP eCLIP1.83□□□□□ -2.12
SCFD1-216ENST00000555550 BCAS1O75363 584 aaPredicted RBP1.83□□□□□ -2.12
SCFD1-216ENST00000555550 ATP5LO75964 103 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 MPZL1O95297 269 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 IGHG4P01861 327 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 POLR2MP0CAP2 368 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 IGHV3-43DP0DP04 118 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 PRPS2P11908 318 aa1.83□□□□□ -2.12
SCFD1-216ENST00000555550 MMP11P24347 488 aa1.83□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms