RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ITPKBP27987 946 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 PCGF3Q3KNV8 242 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ZNF684Q5T5D7 378 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 DNM1P46Q6ZS02 220 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 PRSS41Q7RTY9 318 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 SLC36A1Q7Z2H8 476 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 OR52R1Q8NGF1 315 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 OR5AK2Q8NH90 309 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ZDHHC1Q8WTX9 485 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ZNF296Q8WUU4 475 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-202ENST00000553340 CTHRC1Q96CG8 243 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 RASD2Q96D21 266 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ASB16Q96NS5 453 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 FXYD6Q9H0Q3 95 aa16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.04■□□□□ 0.16
SYNE3-202ENST00000553340 ANXA2P2A6NMY6 339 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 PRR32B1ATL7 298 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 CYR61O00622 381 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TNFSF14O43557 240 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 SIX6O95475 246 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 FGF2P09038 288 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 H2BFSP57053 126 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 GMFBP60983 142 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 ERVK-25P63136 954 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 FIGLAQ6QHK4 219 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TFAP2EQ6VUC0 442 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TMPRSS12Q86WS5 348 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 FLVCR1-AS1Q8TAF5 88 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 SP7Q8TDD2 431 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 ALG12Q9BV10 488 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TRPV4Q9HBA0 871 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 CXXC1Q9P0U4 656 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TP53BP1Q12888 1972 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 F5H5P2 479 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 H7C417 338 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 EGFP01133 1207 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 RLN1P04808 185 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 IFI6P09912 130 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 CCL5P13501 91 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 ADRA2CP18825 462 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 SOX2P48431 317 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 MAZP56270 477 aaKnown RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 OC90Q02509 493 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 ISXQ2M1V0 245 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 GXYLT1Q4G148 440 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 FCRL6Q6DN72 434 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 PDZD9Q8IXQ8 264 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 BVESQ8NE79 360 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 OR5T3Q8NGG3 340 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 RNF166Q96A37 237 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 RERGQ96A58 199 aaPredicted RBP16.03■□□□□ 0.16
SYNE3-202ENST00000553340 GPR174Q9BXC1 333 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TAS2R8Q9NYW2 309 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 MTFP1Q9UDX5 166 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 PILRAQ9UKJ1 303 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 ZNF337Q9Y3M9 751 aa16.03■□□□□ 0.16
SYNE3-202ENST00000553340 TRBV23OR9-2A0A075B6M9 112 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 PRSS38A1L453 326 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 FAM171A2A8MVW0 826 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 LGALS8O00214 317 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 TOR1AO14656 332 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 CBX7O95931 251 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 TMIGD3P0DMS9 266 aaPredicted RBP16.02■□□□□ 0.16
SYNE3-202ENST00000553340 ZNF35P13682 527 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 LTBQ06643 244 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 ZNF273Q14593 569 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 CSRP2Q16527 193 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 C2orf27AQ580R0 203 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 LINC01590Q5TEZ4 76 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 HSD17B13Q7Z5P4 300 aaPredicted RBP16.02■□□□□ 0.16
SYNE3-202ENST00000553340 OR2AK2Q8NG84 335 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 OR14C36Q8NHC7 312 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 SCARF2Q96GP6 870 aaPredicted RBP16.02■□□□□ 0.16
SYNE3-202ENST00000553340 LDAHQ9H6V9 325 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 FKRPQ9H9S5 495 aa16.02■□□□□ 0.16
SYNE3-202ENST00000553340 A0A087WV48 116 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 XRCC3O43542 346 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 ANXA2P07355 339 aaKnown RBP16.02■□□□□ 0.15
SYNE3-202ENST00000553340 OR8G3PP0DMU2 310 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 PSG6Q00889 435 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 ALKBH1Q13686 389 aaKnown RBP16.02■□□□□ 0.15
SYNE3-202ENST00000553340 ZNHIT3Q15649 155 aaPredicted RBP16.02■□□□□ 0.15
SYNE3-202ENST00000553340 LEG1Q6P5S2 330 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 OR4C16Q8NGL9 310 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 HOXB13Q92826 284 aaPredicted RBP16.02■□□□□ 0.15
SYNE3-202ENST00000553340 SEMA4CQ9C0C4 833 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 B3GNT4Q9C0J1 378 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 MS4A7Q9GZW8 240 aaPredicted RBP16.02■□□□□ 0.15
SYNE3-202ENST00000553340 DPP7Q9UHL4 492 aa16.02■□□□□ 0.15
SYNE3-202ENST00000553340 H0YGG7 62 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 CSF1P09603 554 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 IL32P24001 234 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 ARF3P61204 181 aaPredicted RBP16.01■□□□□ 0.15
SYNE3-202ENST00000553340 LRRTM1Q86UE6 522 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 ZNF511Q8NB15 262 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 OR4N2Q8NGD1 307 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 ZFYVE21Q9BQ24 234 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 A0A087WUJ7 227 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 TMEM72A0PK05 275 aa16.01■□□□□ 0.15
SYNE3-202ENST00000553340 CHURC1-FNTBB4DL54 471 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms