RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 OR5V1Q9UGF6 321 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 ING1Q9UK53 422 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 FBXL21Q9UKT6 434 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 PPIEQ9UNP9 301 aaKnown RBP6.84□□□□□ -1.31
LIMA1-213ENST00000552720 OR10H1Q9Y4A9 318 aa6.84□□□□□ -1.31
LIMA1-213ENST00000552720 RPS10-NUDT3A0A1W2PQS6 291 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 H0YC42 278 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 AIPO00170 330 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 PEX14O75381 377 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 EN2P19622 333 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ANXA7P20073 488 aaKnown RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 CDK2P24941 298 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 CTHP32929 405 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 PTH2RP49190 550 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 BLVRAP53004 296 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 UBE2IP63279 158 aaKnown RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 LTBQ06643 244 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 DLX2Q07687 328 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF141Q15928 474 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 LINC00303Q3SY05 128 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 SLC22A10Q63ZE4 541 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 SLC25A25Q6KCM7 469 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 PWWP2BQ6NUJ5 590 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 DPY19L2P2Q6ZN68 376 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF550Q7Z398 422 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 CMIPQ8IY22 773 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 FTMTQ8N4E7 242 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ARHGEF39Q8N4T4 335 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF321PQ8N8H1 164 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 OR51A4Q8NGJ6 313 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ANGPTL6Q8NI99 470 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 FAM174AQ8TBP5 190 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 HGDQ93099 445 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 CCDC120Q96HB5 630 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 MED30Q96HR3 178 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 FOXN4Q96NZ1 517 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 RBP7Q96R05 134 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ELF4Q99607 663 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ULBP3Q9BZM4 244 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 NMNAT2Q9BZQ4 307 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF436Q9C0F3 470 aaPredicted RBP6.84□□□□□ -1.32
LIMA1-213ENST00000552720 PRDM9Q9NQV7 894 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 POLE3Q9NRF9 147 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 COPZ2Q9P299 210 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF281Q9Y2X9 895 aa6.84□□□□□ -1.32
LIMA1-213ENST00000552720 SERINC4A6NH21 518 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 I3L521 148 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 CTDSPLO15194 276 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 KHDRBS3O75525 346 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 OR7A10O76100 309 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GLCEO94923 617 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 WISP1O95388 367 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 MAS1P04201 325 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 PSMB1P20618 241 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 MST1P26927 711 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GPR3P46089 330 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 P2RX1P51575 399 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GPR143P51810 404 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 RPS4XP62701 263 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 LGALS3BPQ08380 585 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 PUDPQ08623 228 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 SNTA1Q13424 505 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 DYRK1AQ13627 763 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 HYAL4Q2M3T9 481 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 SMUG1Q53HV7 270 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM69Q5SWH9 247 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF684Q5T5D7 378 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 LIPNQ5VXI9 398 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 SEZ6L2Q6UXD5 910 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 STAC2Q6ZMT1 411 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 TAF8Q7Z7C8 310 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 OR52B4Q8NGK2 314 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 C1orf216Q8TAB5 229 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 TTC9Q92623 222 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 NXPE2Q96DL1 559 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 C1QTNF6Q9BXI9 259 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 KCNK15Q9H427 330 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GLTPQ9NZD2 209 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 FRRS1LQ9P0K9 344 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 MRM2Q9UI43 246 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 FOXJ3Q9UPW0 622 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 ZNF337Q9Y3M9 751 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 TMEM184BQ9Y519 407 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 PCDHGA5Q9Y5G8 931 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 V9GY05 133 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 TRAV8-7A0A075B6U6 113 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 LINC00862A6NCI5 91 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 MEIS3P1A6NDR6 274 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 OR5K3A6NET4 321 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 KHNYNO15037 678 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 RAD1O60671 282 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 UPK3AO75631 287 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 KRT33AO76009 404 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 UBE2MP61081 183 aaKnown RBP6.83□□□□□ -1.32
LIMA1-213ENST00000552720 HHEXQ03014 270 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 EGR4Q05215 589 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 GAS6Q14393 721 aa6.83□□□□□ -1.32
LIMA1-213ENST00000552720 FBXO46Q6PJ61 603 aaPredicted RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms