RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KRTAP3-3Q9BYR6 98 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 KRTAP3-2Q9BYR7 98 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 NDEL1Q9GZM8 345 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TXNIPQ9H3M7 391 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 FN3KQ9H479 309 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TOR3AQ9H497 397 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 TMEM185BQ9H7F4 350 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 INIPQ9NRY2 104 aa8.55□□□□□ -1.04
LIMA1-211ENST00000552338 ING1Q9UK53 422 aaPredicted RBP8.55□□□□□ -1.04
LIMA1-211ENST00000552338 FREM1Q5H8C1 2179 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 INTS1Q8N201 2190 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 MCIDASD6RGH6 385 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 BLOC1S5-TXNDC5H3BN57 136 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 GPR171O14626 319 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 TRAF3IP2O43734 574 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF432O94892 652 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 HMGN1P05114 100 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 CRHP06850 196 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ADORA3P0DMS8 318 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 FCGR2AP12318 317 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 GABRB1P18505 474 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 GTF2E2P29084 291 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 EPHA2P29317 976 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 SDHAP31040 664 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 GGT2P36268 569 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 CAPGP40121 348 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 EIF1AXP47813 144 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 HIST3H3Q16695 136 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 PGGHGQ32M88 737 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ARMC4Q5T2S8 1044 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 FAM205BPQ63HN1 556 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 TMEM225Q6GV28 225 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ACSM5Q6NUN0 579 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 IZUMO2Q6UXV1 221 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 CREB3L2Q70SY1 520 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 FCRLAQ7L513 359 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 FAM26EQ8N5C1 309 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 OR2T33Q8NG76 320 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 OR52L1Q8NGH7 329 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 OR4Q3Q8NH05 313 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 OR51A7Q8NH64 312 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 MOSPD2Q8NHP6 518 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF519Q8TB69 540 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 TEX47Q8TBZ9 253 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 FANK1Q8TC84 345 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 SLC25A36Q96CQ1 311 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 LRR1Q96L50 414 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 SAMD8Q96LT4 415 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ADAD1Q96M93 576 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ZFP3Q96NJ6 502 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 TSSK6Q9BXA6 273 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 POLDIP3Q9BY77 421 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 MRPL13Q9BYD1 178 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ANKRD60Q9BZ19 345 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 TSPAN10Q9H1Z9 355 aaPredicted RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 EGLN3Q9H6Z9 239 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 EXO5Q9H790 373 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 CMC2Q9NRP2 79 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 KLHL13Q9P2N7 655 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 SEC14L4Q9UDX3 406 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 MCTS1Q9ULC4 181 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 RCE1Q9Y256 329 aa8.54□□□□□ -1.04
LIMA1-211ENST00000552338 SPENQ96T58 3664 aaKnown RBP8.54□□□□□ -1.04
LIMA1-211ENST00000552338 ZZEF1O43149 2961 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CLCA1A8K7I4 914 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 NPIPA2E9PIF3 369 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 NPIPA3F8WFD2 350 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 SURF4O15260 269 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 MPZL2O60487 215 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 RAMP1O60894 148 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 OPN1LWP04000 364 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 IGFBP1P08833 259 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 PTNP21246 168 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 TCEA1P23193 301 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CEACAM8P31997 349 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CTXN1P60606 82 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 RPL27P61353 136 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ISL1P61371 349 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 SNRPGP62308 76 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 HSF1Q00613 529 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 FOXD4Q12950 439 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 GINS1Q14691 196 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 PON3Q15166 354 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 STK11Q15831 433 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 EIF2S3LQ2VIR3 472 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ACSF3Q4G176 576 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 TMEM201Q5SNT2 666 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 EEF1A1P5Q5VTE0 462 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF691Q5VV52 312 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CHMP1BQ7LBR1 199 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 HDDC2Q7Z4H3 204 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 GALNT5Q7Z7M9 940 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 MEX3DQ86XN8 651 aaKnown RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CCDC71Q8IV32 467 aaPredicted RBP8.53□□□□□ -1.04
LIMA1-211ENST00000552338 CCDC103Q8IW40 242 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 UBQLNLQ8IYU4 475 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 C10orf53Q8N6V4 93 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ARIH2OSQ8N7S6 290 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ZIC4Q8N9L1 334 aa8.53□□□□□ -1.04
LIMA1-211ENST00000552338 ZNF555Q8NEP9 628 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms