RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SLC36A2Q495M3 483 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 MESTQ5EB52 335 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 EMC4Q5J8M3 183 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 MARCH3Q86UD3 253 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 PRSS58Q8IYP2 241 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 SRA1Q9HD15 236 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 TEKT2Q9UIF3 430 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 SPATA2Q9UM82 520 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 MRPS17Q9Y2R5 130 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 KLHDC2Q9Y2U9 406 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 CACNG2Q9Y698 323 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 TMEM72A0PK05 275 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 DUX1O43812 170 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 ZFPL1O95159 310 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 UBL3O95164 117 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 HIST1H2ABP04908 130 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 YES1P07947 543 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 TCEA1P23193 301 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 CSF2RBP32927 897 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 BTCP35070 178 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 SRP9P49458 86 aaKnown RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 TOMM34Q15785 309 aaPredicted RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 HLA-DQA1Q5Y7H0 255 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 SLC6A19Q695T7 634 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 HIST3H2AQ7L7L0 130 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 TIGD4Q8IY51 512 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 YIPF7Q8N8F6 280 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 RGP1Q92546 391 aaPredicted RBP16.37■□□□□ 0.21
VIM-209ENST00000544301 HIST1H2ACQ93077 130 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 ORAI1Q96D31 301 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 GFI1Q99684 422 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 WWTR1Q9GZV5 400 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 BOLA1Q9Y3E2 137 aa16.37■□□□□ 0.21
VIM-209ENST00000544301 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ACOD1A6NK06 481 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 H7C1C5 153 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 TO15178 435 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 MMP15P51511 669 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 RAB25P57735 213 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 LCN6P62502 163 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 NDUFA5Q16718 116 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 YIF1BQ5BJH7 314 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 C1orf189Q5VU69 101 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 TIGD3Q6B0B8 471 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 KRT74Q7RTS7 529 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 KCTD20Q7Z5Y7 419 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 DAZLQ92904 295 aaKnown RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 YIPF5Q969M3 257 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 SLC41A2Q96JW4 573 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ADAD1Q96M93 576 aaKnown RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 GFM1Q96RP9 751 aaKnown RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 FKRPQ9H9S5 495 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 PAQR5Q9NXK6 330 aaPredicted RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 MRM2Q9UI43 246 aaKnown RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 NUP210LQ5VU65 1888 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 SEC16AO15027 2179 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 A0A0C4DFX4 3053 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 COL5A1P20908 1838 aaPredicted RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 A0A087WV48 116 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ANKRD61A6NGH8 418 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 TACSTD2P09758 323 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 OR8G3PP0DMU2 310 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 MYF5P13349 255 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 CXCR1P25024 350 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ITPKBP27987 946 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 MAGEB1P43366 347 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 RRAS2P62070 204 aaPredicted RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 BTG1P62324 171 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 PITPNAQ00169 270 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ARHGAP40Q5TG30 622 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ESPNLQ6ZVH7 1005 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 CDC20BQ86Y33 519 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ZNF671Q8TAW3 534 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 LGALS14Q8TCE9 139 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 HSD17B8Q92506 261 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 DERL3Q96Q80 235 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 NDEL1Q9GZM8 345 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 GALNT9Q9HCQ5 603 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 ANKRD10Q9NXR5 420 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 SEMA5BQ9P283 1151 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 CAMK2AQ9UQM7 478 aa16.36■□□□□ 0.21
VIM-209ENST00000544301 PCDHGA9Q9Y5G4 932 aaKnown RBP16.36■□□□□ 0.21
VIM-209ENST00000544301 A0A1W2PQD3 144 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 TVP23AA6NH52 213 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 OR6C70A6NIJ9 312 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 ALG1L2C9J202 215 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 NDUFB5O43674 189 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 EIF4E2O60573 245 aaKnown RBP16.35■□□□□ 0.21
VIM-209ENST00000544301 UPK3AO75631 287 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 RPP14O95059 124 aaKnown RBP16.35■□□□□ 0.21
VIM-209ENST00000544301 BGLAPP02818 100 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 CD3GP09693 182 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 BCKDHBP21953 392 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 DGCR2P98153 550 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 PLCXD2Q0VAA5 305 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 NTRK2Q16620 822 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 POMZP3Q6PJE2 187 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 OR6V1Q8N148 313 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 SLC25A45Q8N413 288 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 OR2T4Q8NH00 348 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms