RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	AKAP8	O43823	692 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PTP4A3	O75365	173 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	MRPL33	O75394	65 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SMNDC1	O75940	238 aa	Known RBP eCLIP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	NDUFB2	O95178	105 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SOX14	O95416	240 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	BCL10	O95999	233 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CRH	P06850	196 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	HLA-DOB	P13765	273 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC6A6	P31641	620 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CEACAM8	P31997	349 aa	Predicted RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	P2RY4	P51582	365 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CLDN17	P56750	224 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ZP4	Q12836	540 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	FOXF2	Q12947	444 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	TOP3A	Q13472	1001 aa	Predicted RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC17A1	Q14916	467 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	LRRC36	Q1X8D7	754 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CLEC12A	Q5QGZ9	265 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ANKRD34A	Q69YU3	496 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SMARCD3	Q6STE5	483 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CASP12	Q6UXS9	341 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ZBTB49	Q6ZSB9	765 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	RASSF6	Q6ZTQ3	369 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CREB3L2	Q70SY1	520 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC35D2	Q76EJ3	337 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	FAM214B	Q7L5A3	538 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	AAED1	Q7RTV5	226 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PXK	Q7Z7A4	578 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	EPHX4	Q8IUS5	362 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ZNF100	Q8IYN0	542 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	MARVELD2	Q8N4S9	558 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CBR4	Q8N4T8	237 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	OR52L1	Q8NGH7	329 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	MAGEE2	Q8TD90	523 aa	Predicted RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SAMD8	Q96LT4	415 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ZFP3	Q96NJ6	502 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	RBM4B	Q9BQ04	359 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	IFT27	Q9BW83	186 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	RBM4	Q9BWF3	364 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	POLDIP3	Q9BY77	421 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	OR52D1	Q9H346	318 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	EGLN3	Q9H6Z9	239 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	RNPEPL1	Q9HAU8	725 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	MCCC2	Q9HCC0	563 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	GP6	Q9HCN6	339 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PAPOLB	Q9NRJ5	636 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	KRT84	Q9NSB2	600 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PARPBP	Q9NWS1	579 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	COQ3	Q9NZJ6	369 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	STX18	Q9P2W9	335 aa	Known RBP	9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545		Q9UFV3	132 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PROCR	Q9UNN8	238 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SIGLEC7	Q9Y286	467 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC5A6	Q9Y289	635 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	HIF3A	Q9Y2N7	669 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	ORC6	Q9Y5N6	252 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	CDH10	Q9Y6N8	788 aa		9.04	□□□□□ -0.96
CPSF7-221	ENST00000543545	PRRC2C	Q9Y520	2896 aa	Known RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	IGKV3D-15	A0A087WSY6	115 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	LOC102725191	A0A1B0GVB3	256 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545		A0A1W2PNV4	684 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545		J3QKU1	62 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	DVL2	O14641	736 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	EI24	O14681	340 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	FZD7	O75084	574 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	SS18L1	O75177	396 aa	Predicted RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	KRT33A	O76009	404 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	PLA2G2A	P14555	144 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	IFNGR1	P15260	489 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	BMP5	P22003	454 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	IGFBP5	P24593	272 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NOS3	P29474	1203 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	UQCRC1	P31930	480 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	OPRM1	P35372	400 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	KIR2DL2	P43627	348 aa	Predicted RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	DAP	P51397	102 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC16A1	P53985	500 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	BID	P55957	195 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	ERVK-25	P63136	954 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	SLC34A1	Q06495	639 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	DAG1	Q14118	895 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	MELK	Q14680	651 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	POU4F3	Q15319	338 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	RFX4	Q33E94	735 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	CARD17	Q5XLA6	110 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	LPCAT4	Q643R3	524 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	RPL13AP3	Q6NVV1	102 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NIPAL3	Q6P499	406 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	FAHD1	Q6P587	224 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	KLHL17	Q6TDP4	642 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	CD300LD	Q6UXZ3	194 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NUFIP2	Q7Z417	695 aa	Known RBP	9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	UBE2J2	Q8N2K1	259 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	NAXE	Q8NCW5	288 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	TEX47	Q8TBZ9	253 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	DNAJC9	Q8WXX5	260 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	CCDC120	Q96HB5	630 aa		9.03	□□□□□ -0.96
CPSF7-221	ENST00000543545	TXNDC15	Q96J42	360 aa		9.03	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms