RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 IFNW1P05000 195 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 GTF2E2P29084 291 aaKnown RBP11.41□□□□□ -0.58
VPS28-216ENST00000533806 DNAJA1P31689 397 aaKnown RBP11.41□□□□□ -0.58
VPS28-216ENST00000533806 MSX2P35548 267 aaPredicted RBP11.41□□□□□ -0.58
VPS28-216ENST00000533806 CLDN17P56750 224 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 LGALS3BPQ08380 585 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 PUDPQ08623 228 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 ST3GAL3Q11203 375 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 PMS2P3Q13401 168 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 BEX5Q5H9J7 111 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 PXKQ7Z7A4 578 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 CDH24Q86UP0 819 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 OFCC1Q8IZS5 231 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 ANKK1Q8NFD2 765 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 OR5J2Q8NH18 312 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 PFN4Q8NHR9 129 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 BCAS4Q8TDM0 211 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 TMEM239Q8WW34 195 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 FAM162AQ96A26 154 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 HS6ST2Q96MM7 605 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 OR2M2Q96R28 347 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 C20orf141Q9NUB4 165 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 RPS6KA6Q9UK32 745 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 NOX1Q9Y5S8 564 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 ENPP4Q9Y6X5 453 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 CELSR1Q9NYQ6 3014 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 PRR14LQ5THK1 2151 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 AKAP6Q13023 2319 aa11.41□□□□□ -0.58
VPS28-216ENST00000533806 HTR3EA5X5Y0 456 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 ENO4A6NNW6 628 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 KPNA4O00629 521 aaPredicted RBP11.4□□□□□ -0.58
VPS28-216ENST00000533806 ARPC2O15144 300 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 UPK3AO75631 287 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 TCN1P20061 433 aaPredicted RBP11.4□□□□□ -0.58
VPS28-216ENST00000533806 CALB2P22676 271 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 MPGP29372 298 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 YAP1P46937 504 aaKnown RBP11.4□□□□□ -0.58
VPS28-216ENST00000533806 TESK1Q15569 626 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 C1QTNF12Q5T7M4 302 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 OR7E24Q6IFN5 339 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 NIPAL3Q6P499 406 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 RINLQ6ZS11 566 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 FKBP9P1Q75LS8 142 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 SSX8Q7RTT4 187 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 C10orf53Q8N6V4 93 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 WDR31Q8NA23 367 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 C1orf162Q8NEQ5 155 aaPredicted RBP11.4□□□□□ -0.58
VPS28-216ENST00000533806 PIK3IP1Q96FE7 263 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 TXNDC15Q96J42 360 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 C1orf21Q9H246 121 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 NANSQ9NR45 359 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 TAS2R1Q9NYW7 299 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 NDUFAF4Q9P032 175 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 ST6GALNAC2Q9UJ37 374 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 MAGEL2Q9UJ55 1249 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 SAMD4AQ9UPU9 718 aaKnown RBP11.4□□□□□ -0.58
VPS28-216ENST00000533806 SLC25A15Q9Y619 301 aa11.4□□□□□ -0.58
VPS28-216ENST00000533806 DPRXA6NFQ7 191 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 RAD51DO75771 328 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 OR7A10O76100 309 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 NQO1P15559 274 aaKnown RBP11.39□□□□□ -0.59
VPS28-216ENST00000533806 NR1H2P55055 460 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 VLDLRP98155 873 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 POU3F1Q03052 451 aaPredicted RBP11.39□□□□□ -0.59
VPS28-216ENST00000533806 FHL1Q13642 323 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 C1DQ13901 141 aaKnown RBP11.39□□□□□ -0.59
VPS28-216ENST00000533806 TRAM2Q15035 370 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 PPA1Q15181 289 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 PHYHD1Q5SRE7 291 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 NCMAPQ5T1S8 102 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 TRPM8Q7Z2W7 1104 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 WFDC8Q8IUA0 241 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 UEVLDQ8IX04 471 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 ARHGAP24Q8N264 748 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 C17orf78Q8N4C9 275 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 PIK3C3Q8NEB9 887 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 LILRB1Q8NHL6 650 aaPredicted RBP11.39□□□□□ -0.59
VPS28-216ENST00000533806 NINJ1Q92982 152 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 PYURFQ96I23 114 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 LRR1Q96L50 414 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 DHRS1Q96LJ7 313 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 FUZQ9BT04 418 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 ANKRD19PQ9H560 264 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 NMNAT1Q9HAN9 279 aaPredicted RBP11.39□□□□□ -0.59
VPS28-216ENST00000533806 SLC17A5Q9NRA2 495 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 MED29Q9NX70 200 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 NPAP1Q9NZP6 1156 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 RHCGQ9UBD6 479 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 UPB1Q9UBR1 384 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 MED31Q9Y3C7 131 aa11.39□□□□□ -0.59
VPS28-216ENST00000533806 A0A087WUU8 490 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 A0A1W2PRQ8 180 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 CIB4A0PJX0 185 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 SLC35F4A4IF30 521 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 SLC43A1O75387 559 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 PLAUP00749 431 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 ADORA3P0DMS8 318 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 RHCEP18577 417 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 FUT1P19526 365 aa11.38□□□□□ -0.59
VPS28-216ENST00000533806 MAKP20794 623 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms