RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MST1LQ2TV78 715 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 C3orf36Q3SXR2 165 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ULK3Q6PHR2 472 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 C6orf89Q6UWU4 347 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 H1FNTQ75WM6 255 aaPredicted RBP12.82□□□□□ -0.36
VPS28-215ENST00000531924 LINGO2Q7L985 606 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 CCDC36Q8IYA8 594 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 FAM169BQ8N8A8 192 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 LSMEM1Q8N8F7 131 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ANKS4BQ8N8V4 417 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ZNF540Q8NDQ6 660 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ZNF417Q8TAU3 575 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 DYDC1Q8WWB3 177 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 TAAR8Q969N4 342 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 SPDL1Q96EA4 605 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 SLC47A1Q96FL8 570 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 SORCS2Q96PQ0 1159 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ZNF587Q96SQ5 575 aaPredicted RBP12.82□□□□□ -0.36
VPS28-215ENST00000531924 EPYCQ99645 322 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 PTDSS2Q9BVG9 487 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ASPNQ9BXN1 380 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 CRLF2Q9HC73 371 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 GPR35Q9HC97 309 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 B3GAT2Q9NPZ5 323 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 KCNS2Q9ULS6 477 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 CR1P17927 2039 aa12.82□□□□□ -0.36
VPS28-215ENST00000531924 ALPK2Q86TB3 2170 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 MXRA5Q9NR99 2828 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 LOC100289279A0A1B0GTE1 492 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 RPL36A-HNRNPH2H7BZ11 118 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 M0R3G1 203 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 LMX1BO60663 402 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 IGHV4-31P0DP07 118 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 ARAFP10398 606 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 APEHP13798 732 aaKnown RBP12.81□□□□□ -0.36
VPS28-215ENST00000531924 CBR1P16152 277 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 ARR3P36575 388 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 NR4A2P43354 598 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 IDH3AP50213 366 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 ADIPOQQ15848 244 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 CEACAM16Q2WEN9 425 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 CARD17Q5XLA6 110 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 FAM166AQ6J272 317 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 DHRS4L2Q6PKH6 230 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 BLOC1S3Q6QNY0 202 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 BHLHE22Q8NFJ8 381 aaPredicted RBP12.81□□□□□ -0.36
VPS28-215ENST00000531924 IL17RDQ8NFM7 739 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 C7orf26Q96N11 449 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 ANKRD27Q96NW4 1050 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 FOXN4Q96NZ1 517 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 CHODLQ9H9P2 273 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 TMEM160Q9NX00 188 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 CRNNQ9UBG3 495 aaPredicted RBP12.81□□□□□ -0.36
VPS28-215ENST00000531924 SEC14L4Q9UDX3 406 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 USP22Q9UPT9 525 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 CORINQ9Y5Q5 1042 aa12.81□□□□□ -0.36
VPS28-215ENST00000531924 FBN3Q75N90 2809 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 ZNF726A6NNF4 738 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 ZNF432O94892 652 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 IGLV1-44P01699 117 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 NPR2P20594 1047 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 HNF1AP20823 631 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 HTR2AP28223 471 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 AQP1P29972 269 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 PMS2P3Q13401 168 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 SCARB2Q14108 478 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 EFNB3Q15768 340 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 AGKQ53H12 422 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 LRIF1Q5T3J3 769 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 FAM91A1Q658Y4 838 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 SPATA21Q7Z572 469 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 RANBP3LQ86VV4 465 aaPredicted RBP12.8□□□□□ -0.36
VPS28-215ENST00000531924 SNX32Q86XE0 403 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 ARMC8Q8IUR7 673 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 NUP37Q8NFH4 326 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 OR2M2Q96R28 347 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 CCDC28BQ9BUN5 200 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 DYNLRB1Q9NP97 96 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 SLC25A37Q9NYZ2 338 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 KLHL14Q9P2G3 628 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 B3GAT1Q9P2W7 334 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 TESQ9UGI8 421 aaKnown RBP12.8□□□□□ -0.36
VPS28-215ENST00000531924 POFUT2Q9Y2G5 429 aa12.8□□□□□ -0.36
VPS28-215ENST00000531924 HEATR1Q9H583 2144 aaKnown RBP12.79□□□□□ -0.36
VPS28-215ENST00000531924 LOC102725191A0A1B0GVB3 256 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 hCG_2039718K7EN88 272 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 PHF1O43189 567 aaPredicted RBP12.79□□□□□ -0.36
VPS28-215ENST00000531924 OR6A2O95222 327 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 IGKV3-15P01624 115 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 CD79AP11912 226 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 SRD5A1P18405 259 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 AHCYP23526 432 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 CALCRP30988 508 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 THBS4P35443 961 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 MRPL19P49406 292 aaKnown RBP12.79□□□□□ -0.36
VPS28-215ENST00000531924 PPOXP50336 477 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 AQP5P55064 265 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 AGBL2Q5U5Z8 902 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 SVOPLQ8N434 492 aa12.79□□□□□ -0.36
VPS28-215ENST00000531924 ADPRHL1Q8NDY3 354 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms