RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CNRIP1Q96F85 164 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 CPB2Q96IY4 423 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ZIM3Q96PE6 472 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ZNF300Q96RE9 604 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 PRRT1Q99946 306 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 APOL2Q9BQE5 337 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 RPP25Q9BUL9 199 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 ROGDIQ9GZN7 287 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 COMMD4Q9H0A8 199 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 METTL9Q9H1A3 318 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 POLR3FQ9H1D9 316 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 SLC25A51Q9H1U9 297 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ASB7Q9H672 318 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 C11orf49Q9H6J7 331 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 WDR55Q9H6Y2 383 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 GPN2Q9H9Y4 310 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 WDR41Q9HAD4 459 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 ELL3Q9HB65 397 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 ZNF160Q9HCG1 818 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 MYOZ1Q9NP98 299 aaPredicted RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 IL1RAPQ9NPH3 570 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 XPNPEP1Q9NQW7 623 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 MRPL22Q9NWU5 206 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 ADA2Q9NZK5 511 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 MYEF2Q9P2K5 600 aaKnown RBP2.76□□□□□ -1.97
CD44-229ENST00000528672 SEC14L4Q9UDX3 406 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 C3orf18Q9UK00 162 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 HYOU1Q9Y4L1 999 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 EEA1Q15075 1411 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 KIAA1107Q9UPP5 1409 aa2.76□□□□□ -1.97
CD44-229ENST00000528672 EIF3AQ14152 1382 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 RAB3GAP2Q9H2M9 1393 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 GRIN2DO15399 1336 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SALL1Q9NSC2 1324 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 ESYT2A0FGR8 921 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 IGLON5A6NGN9 336 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 OR2AT4A6NND4 320 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 RNF212BA8MTL3 300 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 FAM72CH0Y354 149 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 K7EQD1 137 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 WWP2O00308 870 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PFDN6O15212 129 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SLC22A1O15245 554 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 CTNSO60931 367 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 UPK3AO75631 287 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SCGNO76038 276 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 NDUFB10O96000 172 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PIGRP01833 764 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 GUSBP08236 651 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PATE4P0C8F1 98 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 ADORA3P0DMS8 318 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PNMTP11086 282 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 H2AFXP16104 143 aaPredicted RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 PRKACGP22612 351 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 ANOS1P23352 680 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 WARSP23381 471 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 DTYMKP23919 212 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 MAS1LP35410 378 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 MMP12P39900 470 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SLCO1A2P46721 670 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 BRCC3P46736 316 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 CDK9P50750 372 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 AP2S1P53680 142 aaPredicted RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 PKNOX1P55347 436 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 RGS8P57771 180 aaPredicted RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 GNG2P59768 71 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 NTHL1P78549 312 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 CYCSP99999 105 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 CSTF1Q05048 431 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 RAD51Q06609 339 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 STX3Q13277 289 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 AQP6Q13520 282 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 KIAA0141Q14154 515 aaPredicted RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 EIF2B1Q14232 305 aaKnown RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 MESDQ14696 234 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SMCO1Q147U7 214 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 TGFBIQ15582 683 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 CHI3L2Q15782 390 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 UBE2V2Q15819 145 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 EXOC3L4Q17RC7 722 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 NDUFAF6Q330K2 333 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 XKR7Q5GH72 579 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 FAM72AQ5TYM5 149 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 SLX4IPQ5VYV7 408 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 KCTD16Q68DU8 428 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 TIGD3Q6B0B8 471 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 FAM72DQ6L9T8 149 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PRR5LQ6MZQ0 368 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 PWWP2BQ6NUJ5 590 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 ARMCX5Q6P1M9 558 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 BHLHB9Q6PI77 547 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 KCNIP4Q6PIL6 250 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 LCLAT1Q6UWP7 414 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 HACD2Q6Y1H2 254 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 C3P1Q6ZMU1 363 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 FRRS1Q6ZNA5 592 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 Q6ZPB1 254 aaPredicted RBP2.75□□□□□ -1.97
CD44-229ENST00000528672 LANCL3Q6ZV70 420 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 MOB2Q70IA6 237 aa2.75□□□□□ -1.97
CD44-229ENST00000528672 NIPA1Q7RTP0 329 aa2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms