RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 JUNBP17275 347 aaPredicted RBP18.88■□□□□ 0.61
VPS28-208ENST00000527797 C21orf33P30042 268 aaPredicted RBP18.88■□□□□ 0.61
VPS28-208ENST00000527797 EIF2S3P41091 472 aaKnown RBP18.88■□□□□ 0.61
VPS28-208ENST00000527797 EMX1Q04741 257 aaPredicted RBP18.88■□□□□ 0.61
VPS28-208ENST00000527797 NADK2Q4G0N4 442 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 KLHL12Q53G59 568 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.88■□□□□ 0.61
VPS28-208ENST00000527797 SATL1Q86VE3 508 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 TMEM251Q8N6I4 163 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 NPEPL1Q8NDH3 523 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 ADPRHL1Q8NDY3 354 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 TMEM80Q96HE8 168 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 KLHL15Q96M94 604 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 NMNAT3Q96T66 252 aa18.88■□□□□ 0.61
VPS28-208ENST00000527797 RRP8O43159 456 aaKnown RBP18.87■□□□□ 0.61
VPS28-208ENST00000527797 PLGP00747 810 aaPredicted RBP18.87■□□□□ 0.61
VPS28-208ENST00000527797 PCMT1P22061 227 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 RPL27P61353 136 aaKnown RBP18.87■□□□□ 0.61
VPS28-208ENST00000527797 MVKQ03426 396 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 RAB40BQ12829 278 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 TMED1Q13445 227 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 KRR1Q13601 381 aaKnown RBP18.87■□□□□ 0.61
VPS28-208ENST00000527797 ACKR1Q16570 336 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 LEG1Q6P5S2 330 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 SLC22A16Q86VW1 577 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 TM9SF4Q92544 642 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 OR51V1Q9H2C8 321 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 TXNIPQ9H3M7 391 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 FANCFQ9NPI8 374 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 QPCTLQ9NXS2 382 aa18.87■□□□□ 0.61
VPS28-208ENST00000527797 WARS2Q9UGM6 360 aaKnown RBP18.87■□□□□ 0.61
VPS28-208ENST00000527797 TRAV17A0A0B4J275 112 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 SLC22A31A6NKX4 558 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 FADS2O95864 444 aaKnown RBP18.86■□□□□ 0.61
VPS28-208ENST00000527797 IGHMP01871 453 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 CDKN2AP42771 156 aaKnown RBP18.86■□□□□ 0.61
VPS28-208ENST00000527797 MAGEA5P43359 124 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 MAP2K4P45985 399 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 ID4P47928 161 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 PPIAP62937 165 aaKnown RBP18.86■□□□□ 0.61
VPS28-208ENST00000527797 CSNK2A1P68400 391 aaPredicted RBP18.86■□□□□ 0.61
VPS28-208ENST00000527797 XAF1Q6GPH4 301 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 KDM8Q8N371 416 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 TMEM99Q8N816 258 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 LGALS12Q96DT0 336 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 DDOQ99489 341 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 CDCA4Q9BXL8 241 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 CSAG2Q9Y5P2 127 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 COMMD3-BMI1R4GMX3 469 aa18.86■□□□□ 0.61
VPS28-208ENST00000527797 A0A0J9YW62 118 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 A0A1W2PNV4 684 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 XKRYO14609 159 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 POU3F2P20265 443 aaPredicted RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 ACVR1BP36896 505 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 SLC16A1P53985 500 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 GFRA1P56159 465 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 RPS7P62081 194 aaKnown RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 MESTQ5EB52 335 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ARMC4Q5T2S8 1044 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 GTF2IRD2BQ6EKJ0 949 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 PXKQ7Z7A4 578 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 GTF2IRD2Q86UP8 949 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ZADH2Q8N4Q0 377 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ARIH2OSQ8N7S6 290 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 C9orf43Q8TAL5 461 aaPredicted RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 OR6C68A6NDL8 312 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ACOT7O00154 380 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 EIF1BO60739 113 aaKnown RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 RAB36O95755 333 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 CELA3AP09093 270 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 SLC2A5P22732 501 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ATP6V1E1P36543 226 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ZNF239Q16600 458 aaKnown RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 TMEM225Q6GV28 225 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 PAQR6Q6TCH4 344 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 ESPNLQ6ZVH7 1005 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 GHDCQ8N2G8 530 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 OR52I1Q8NGK6 324 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 OR9Q1Q8NGQ5 310 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 TMIGD2Q96BF3 282 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 DCBLD2Q96PD2 775 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 TEAD3Q99594 435 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 TUBA1CQ9BQE3 449 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 FGF20Q9NP95 211 aaPredicted RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 ACOT13Q9NPJ3 140 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 NDUFA13Q9P0J0 144 aa18.85■□□□□ 0.61
VPS28-208ENST00000527797 DIMT1Q9UNQ2 313 aaKnown RBP18.85■□□□□ 0.61
VPS28-208ENST00000527797 MPDZO75970 2070 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 AQP7P3A6NL99 342 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 NPIPA5E9PKD4 350 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 TNFSF11O14788 317 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 SEC14L5O43304 696 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 ARHGEF9O43307 516 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 RENP00797 406 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 CLUP10909 449 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 HLA-DOBP13765 273 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 DCKP27707 260 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 STARP49675 285 aa18.84■□□□□ 0.61
VPS28-208ENST00000527797 DAP3P51398 398 aaKnown RBP18.84■□□□□ 0.61
VPS28-208ENST00000527797 P2RY4P51582 365 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms