RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 AP3S2P59780 193 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 FAM69AQ5T7M9 428 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 HES5Q5TA89 166 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 ZNF433Q8N7K0 673 aaPredicted RBP19.33■□□□□ 0.69
VPS28-205ENST00000526204 OR11H7Q8NGC8 314 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 RNF166Q96A37 237 aaPredicted RBP19.33■□□□□ 0.69
VPS28-205ENST00000526204 TGM7Q96PF1 710 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 GFI1Q99684 422 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 SPRTNQ9H040 489 aaPredicted RBP19.33■□□□□ 0.69
VPS28-205ENST00000526204 SLC2A4RGQ9NR83 387 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 PNO1Q9NRX1 252 aaKnown RBP19.33■□□□□ 0.69
VPS28-205ENST00000526204 ZNF222Q9UK12 451 aa19.33■□□□□ 0.69
VPS28-205ENST00000526204 IGHV5-51A0A0C4DH38 117 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 FRG2CA6NGY1 282 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 TMEM150CB9EJG8 249 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 PSMD9O00233 223 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 SULT1B1O43704 296 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 POU3F3P20264 500 aaPredicted RBP19.33■□□□□ 0.68
VPS28-205ENST00000526204 DPP4P27487 766 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 LCN1P31025 176 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 HTR2BP41595 481 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 SLC6A8P48029 635 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 EGR4Q05215 589 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 GSG1Q2KHT4 349 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 LINGO2Q7L985 606 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 PRSS45Q7RTY3 260 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 LUZP2Q86TE4 346 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 TIGD4Q8IY51 512 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 C9orf62Q8N4C0 152 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 OR2T4Q8NH00 348 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 OR5AK2Q8NH90 309 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 LMX1AQ8TE12 382 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 LPAR4Q99677 370 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 NXF5Q9H1B4 397 aaKnown RBP19.33■□□□□ 0.68
VPS28-205ENST00000526204 LANCL2Q9NS86 450 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 ANKRD10Q9NXR5 420 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 EMC3Q9P0I2 261 aa19.33■□□□□ 0.68
VPS28-205ENST00000526204 SPTBN5Q9NRC6 3674 aaKnown RBP19.33■□□□□ 0.68
VPS28-205ENST00000526204 TMEM72A0PK05 275 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 PRR32B1ATL7 298 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 IQCJ-SCHIP1C9J366 451 aaPredicted RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 HIST1H2ABP04908 130 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 RAB40ALP0C0E4 278 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 CALCBP10092 127 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 CCR6P51684 374 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 SNRPD2P62316 118 aaKnown RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 ALKBH1Q13686 389 aaKnown RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 Q499Y3 187 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 GPR139Q6DWJ6 353 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 ZNF782Q6ZMW2 699 aaPredicted RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 HIST3H2AQ7L7L0 130 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 SYT13Q7L8C5 426 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 NANOGNBQ7Z5D8 188 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 FGD2Q7Z6J4 655 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 TMEM151BQ8IW70 566 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 ZNF563Q8TA94 476 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 RAB40AQ8WXH6 277 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 RGP1Q92546 391 aaPredicted RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 SNAPC3Q92966 411 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 HIST1H2ACQ93077 130 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 LCORQ96JN0 433 aaPredicted RBP19.32■□□□□ 0.68
VPS28-205ENST00000526204 TSSK2Q96PF2 358 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 LAT2Q9GZY6 243 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 SLC25A18Q9H1K4 315 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 TCF7L1Q9HCS4 588 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 TMEM131Q92545 1883 aa19.32■□□□□ 0.68
VPS28-205ENST00000526204 GABARAPH6UMI1 98 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ZNF217O75362 1048 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 UPK3AO75631 287 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 MT-ND4P03905 459 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ANKRD34CP0C6C1 535 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ZNF24P17028 368 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 RPL18Q07020 188 aaKnown RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 LIPNQ5VXI9 398 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 APOOLQ6UXV4 268 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 CDC20BQ86Y33 519 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 SLC25A38Q96DW6 304 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 CLIP3Q96DZ5 547 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 S100A16Q96FQ6 103 aaKnown RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 MAP6Q96JE9 813 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 OR1F2PQ96R84 312 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 YIPF2Q9BWQ6 316 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ADAM19Q9H013 955 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 LIN7BQ9HAP6 207 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 MRM2Q9UI43 246 aaKnown RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 CACNA1IQ9P0X4 2223 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 NAP1L6A6NFF2 107 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 PRKNO60260 465 aaPredicted RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 WNT1P04628 370 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 F13BP05160 661 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 OR8G3PP0DMU2 310 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 MST1P26927 711 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 GFERP55789 205 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 MRPS10P82664 201 aaKnown RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 FCRLAQ7L513 359 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 IZUMO1Q8IYV9 350 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ZNF431Q8TF32 576 aaPredicted RBP19.31■□□□□ 0.68
VPS28-205ENST00000526204 C15orf40Q8WUR7 153 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 ZDHHC12Q96GR4 267 aa19.31■□□□□ 0.68
VPS28-205ENST00000526204 AUNIPQ9H7T9 357 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms