RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZNF229Q9UJW7 825 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANAPC7Q9UJX3 599 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 GGA2Q9UJY4 613 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AGO1Q9UL18 857 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMCO1Q9UM00 188 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBQLN1Q9UMX0 589 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 COPS3Q9UNS2 423 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ERVW-1Q9UQF0 538 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SCML2Q9UQR0 700 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 CFL2Q9Y281 166 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EXOGQ9Y2C4 368 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC17A4Q9Y2C5 497 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 POFUT2Q9Y2G5 429 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRG3Q9Y2Y8 225 aaPredicted RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MEMO1Q9Y316 297 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLLPQ9Y342 182 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 RBMX2Q9Y388 322 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 MOB4Q9Y3A3 225 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 EXOSC1Q9Y3B2 195 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AK6Q9Y3D8 172 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAMHD1Q9Y3Z3 626 aaKnown RBP0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 OARD1Q9Y530 152 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 USP16Q9Y5T5 823 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALG6Q9Y672 507 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 AUP1Q9Y679 476 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 SELENOKQ9Y6D0 94 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 R4GN57 208 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 URGCP-MRPS24S4R325 110 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 V9GYY9 64 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 FRMPD3Q5JV73 1810 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARID2Q68CP9 1835 aa0.5□□□□□ -2.33
RNU4-54P-201ENST00000516428 USP6P35125 1406 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C9orf84Q5VXU9 1444 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARHGEF17Q96PE2 2063 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 EIF3AQ14152 1382 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KIAA0232Q92628 1395 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD30BQ9BXX2 1392 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD30AQ9BXX3 1397 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PLEKHH1Q9ULM0 1364 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TTC3P53804 2025 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABCB11O95342 1321 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NEDD4P46934 1319 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CGNL1Q0VF96 1302 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FANCIQ9NVI1 1328 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV5-45A0A087WSX0 123 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NSG1A0A0A6YYJ2 146 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV9-49A0A0B4J1Y8 123 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGHV4-61A0A0C4DH41 118 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0G2JK05 382 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRBV4-1A0A0J9YWV2 114 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GLYATL1P3A0A0U1RQE8 302 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSFX4A0A1B0GTS1 333 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GU03 582 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GUV1 79 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 HSFX3A0A1B0GWH4 333 aaPredicted RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PPC1 479 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PRG6 482 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TCRBV9S1A1TA0A576 114 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD20A5PA0PJZ0 165 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 MEX3AA1L020 520 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TSPAN11A1L157 253 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 BCLAF3A2AJT9 711 aaKnown RBP0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMB11A5LHX3 300 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM231BA6NCW3 169 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASPDHA6ND91 283 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5H15A6NDH6 313 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FABP12A6NFH5 140 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA6L10A6NI86 522 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAGE2PA6NJ88 616 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A20A6NK97 555 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5B21A6NL26 309 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IFITM10A6NMD0 228 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA8JA6NMD2 632 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR5K4A6NMS3 321 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SNURFLB1AK76 121 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 IDSB3KWA1 339 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM114B3SHH9 223 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SEC14L6B5MCN3 397 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA8KD6RF30 607 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 E5RI56 91 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 FTCDNL1E5RQL4 147 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 E7ENQ6 273 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 NEDD8-MDP1E9PL57 170 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 C11orf98E9PRG8 122 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 G3V3Y1 287 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 H3BMH7 237 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 H3BMQ9 156 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 H3BN98 237 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 KLRC4-KLRK1H3BQV0 150 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 H3BQV1 296 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMLR1H3BR10 107 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA8MH3BSY2 632 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 H7C2Y5 167 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 hCG_2039718K7EN88 272 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 M0R036 132 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCL24O00175 119 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDHXO00330 501 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 SULT1C2O00338 296 aa0.49□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCL21O00585 134 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms