RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	OR1J2	Q8NGS2	313 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	HIF1AN	Q9NWT6	349 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	EBF1	Q9UH73	591 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	DUSP5	Q16690	384 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	HES3	Q5TGS1	186 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	ZNF836	Q6ZNA1	936 aa		13.29	□□□□□ -0.28
TRIO-222	ENST00000515144	UBFD1	O14562	309 aa	Known RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	TSPYL5	Q86VY4	417 aa	Predicted RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	ACOT11	Q8WXI4	607 aa	Predicted RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	PIP	P12273	146 aa	Predicted RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	ATF4	P18848	351 aa	Predicted RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	PPP5C	P53041	499 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	WNT4	P56705	351 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	BCL7A	Q4VC05	210 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	TMEM200A	Q86VY9	491 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CNTN4	Q8IWV2	1026 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CHTF18	Q8WVB6	975 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	SLC6A5	Q9Y345	797 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CNIH1	O95406	144 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	MEPCE	Q7L2J0	689 aa	Known RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CPEB2	Q7Z5Q1	589 aa	Known RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	GNG12	Q9UBI6	72 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144		F5H0A9	414 aa	Predicted RBP	13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	HSD17B6	O14756	317 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	AFMID	Q63HM1	303 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CYS1	Q717R9	158 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	SYT3	Q9BQG1	590 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	SELENOI	Q9C0D9	397 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	LRRC30	A6NM36	301 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CD34	P28906	385 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	SPRED2	Q7Z698	418 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	NTNG1	Q9Y2I2	539 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CEBPZOS	A8MTT3	80 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	RP2	O75695	350 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CCR5	P51681	352 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	DMRTC1	Q5HYR2	192 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	STOML3	Q8TAV4	291 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	ROBO4	Q8WZ75	1007 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	CTSF	Q9UBX1	484 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	PIGL	Q9Y2B2	252 aa		13.28	□□□□□ -0.28
TRIO-222	ENST00000515144	TRIM64C	A6NLI5	447 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	SHISA8	B8ZZ34	492 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144		H0YIV9	168 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	CELA2B	P08218	269 aa	Predicted RBP	13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	PLEKHN1	Q494U1	663 aa	Predicted RBP	13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	BCDIN3D	Q7Z5W3	292 aa	Known RBP	13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	EMG1	Q92979	244 aa	Known RBP	13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	LHPP	Q9H008	270 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	ETAA1	Q9NY74	926 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	HRH3	Q9Y5N1	445 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	FANCG	O15287	622 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	ZIC2	O95409	532 aa	Predicted RBP	13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	PTPN6	P29350	595 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	ABHD17C	Q6PCB6	329 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	LHX6	Q9UPM6	363 aa		13.27	□□□□□ -0.28
TRIO-222	ENST00000515144	P2RY10	O00398	339 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	ATP1B3	P54709	279 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	IL10RA	Q13651	578 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	SNX18	Q96RF0	628 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	POTEKP	Q9BYX7	375 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	MMACHC	Q9Y4U1	282 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	BTBD17	A6NE02	478 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	SLC35E2	P0CK97	266 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	RAB4B	P61018	213 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	CDK5R2	Q13319	367 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	C6orf183	Q5T699	404 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	EIF5AL1	Q6IS14	154 aa	Known RBP	13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	GPR155	Q7Z3F1	870 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	LINC01465	Q8N7H1	131 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	TUBA1C	Q9BQE3	449 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	SARG	Q9BW04	601 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	MKS1	Q9NXB0	559 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	EHF	Q9NZC4	300 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	PCDHGA5	Q9Y5G8	931 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	PENK	P01210	267 aa	Predicted RBP	13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	ALDOB	P05062	364 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	SLC48A1	Q6P1K1	146 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	SGPP2	Q8IWX5	399 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	GLUL	P15104	373 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	CX3CR1	P49238	355 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	ELAVL1	Q15717	326 aa	Known RBP	13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	EIF2S3L	Q2VIR3	472 aa	Known RBP	13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	GPR139	Q6DWJ6	353 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	GTF2H4	Q92759	462 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	PIGT	Q969N2	578 aa		13.27	□□□□□ -0.29
TRIO-222	ENST00000515144	ZNF814	B7Z6K7	855 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	HPR	P00739	348 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	MRPL58	Q14197	206 aa	Known RBP	13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	TBRG1	Q3YBR2	411 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	TMEM185A	Q8NFB2	350 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	ELP4	Q96EB1	424 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	PTTG3P	Q9NZH4	202 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	HSPB11	Q9Y547	144 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	ZNF136	P52737	540 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	CLDN12	P56749	244 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	PGAP1	Q75T13	922 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	OR6V1	Q8N148	313 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	LGALS8	O00214	317 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	SELENOF	O60613	162 aa		13.26	□□□□□ -0.29
TRIO-222	ENST00000515144	BCORP1	Q8N888	145 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 179 ms