RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 AUP1Q9Y679 476 aa7.23□□□□□ -1.25
SCN1A-207ENST00000507401 DOCK7Q96N67 2140 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CCDC168Q8NDH2 2452 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CCDC182A6NF36 153 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CLCA1A8K7I4 914 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 KDM4EB2RXH2 506 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 B4DXG7 233 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 NR5A2O00482 541 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PIP5K1BO14986 540 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TBX1O43435 398 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 HCRTR2O43614 444 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 AIREO43918 545 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TNFRSF21O75509 655 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 INMTO95050 263 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GOSR1O95249 250 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 C1QBP02746 253 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TMIGD3P0DMS9 266 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CD36P16671 472 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 HK1P19367 917 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PRPS1L1P21108 318 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TBXA2RP21731 343 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ELK4P28324 431 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 UQCRC1P31930 480 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 STARP49675 285 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 DGKQP52824 942 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 RPL38P63173 70 aaKnown RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 SORDQ00796 357 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 HSPB3Q12988 150 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 MAD2L1Q13257 205 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ASAH1Q13510 395 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TESK1Q15569 626 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 MAPK11Q15759 364 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ATP6AP1LQ52LC2 224 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GPAT3Q53EU6 434 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 EXOSC6Q5RKV6 272 aaKnown RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 C6orf136Q5SQH8 315 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ARMC4Q5T2S8 1044 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CPTPQ5TA50 214 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 SPNS3Q6ZMD2 512 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GDPD3Q7L5L3 318 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CHMP1BQ7LBR1 199 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 KCTD20Q7Z5Y7 419 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CCDC190Q86UF4 302 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PARP16Q8N5Y8 322 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GDPD1Q8N9F7 314 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 C9orf106Q8NAJ2 232 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 NUP43Q8NFH3 380 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GPR151Q8TDV0 419 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 OR5P2Q8WZ92 322 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 SLC7A6Q92536 515 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 FIG4Q92562 907 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CIDECQ96AQ7 238 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 COQ8BQ96D53 544 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 GIMAP5Q96F15 307 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ST6GAL2Q96JF0 529 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 RADILQ96JH8 1075 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PIGQQ9BRB3 760 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 SLC30A2Q9BRI3 323 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 G6PC3Q9BUM1 346 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 BTBD2Q9BX70 525 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 TBL1XR1Q9BZK7 514 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PIGMQ9H3S5 423 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ACOT13Q9NPJ3 140 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 C12orf4Q9NQ89 552 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 MED11Q9P086 117 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 CLCF1Q9UBD9 225 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 DKKL1Q9UK85 242 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 USP22Q9UPT9 525 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 FIS1Q9Y3D6 152 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 PMF1-BGLAPU3KQ54 211 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 SPG11Q96JI7 2443 aa7.22□□□□□ -1.25
SCN1A-207ENST00000507401 ANKHD1Q8IWZ3 2542 aaKnown RBP7.22□□□□□ -1.25
SCN1A-207ENST00000507401 A0A087WZY1 265 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 A0A1W2PRB8 838 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GXYLT2A0PJZ3 443 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 A8MXE2 369 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 TMEM233B4DJY2 109 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ALG1L2C9J202 215 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GNGT2O14610 69 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SCAMP2O15127 329 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 TPST1O60507 370 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZNF780AO75290 641 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SLC22A3O75751 556 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 UTS2O95399 124 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 LAMP1P11279 417 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GGT1P19440 569 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 POU3F2P20265 443 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PSMB9P28065 219 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GZMKP49863 264 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PRKAG1P54619 331 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 WNT3P56703 355 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 C21orf58P58505 322 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SRYQ05066 204 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 FAPQ12884 760 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 FGFBP1Q14512 234 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 TMEM44Q2T9K0 475 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 FLYWCH1Q4VC44 716 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 KLHL12Q53G59 568 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms