RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 C3orf49Q96BT1 292 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HEXA-AS1Q9H8Q6 139 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RNF215Q9Y6U7 377 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MPDZO75970 2070 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SPTBP11277 2137 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MEIKINA0A087WXM9 373 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SERINC4A6NH21 518 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ACOD1A6NK06 481 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR5K4A6NMS3 321 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPR171O14626 319 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF749O43361 778 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPRIN2O60269 458 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PPM1BO75688 479 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TYRP1P17643 537 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 DPP4P27487 766 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 IGLV3-21P80748 117 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ERV3-1Q14264 604 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF267Q14586 743 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZSWIM7Q19AV6 140 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ISXQ2M1V0 245 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HES5Q5TA89 166 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 STPG1Q5TH74 334 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC22A10Q63ZE4 541 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 UBALD2Q8IYN6 164 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BCORP1Q8N888 145 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR8H1Q8NGG4 311 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PHYHIPQ92561 330 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC25A38Q96DW6 304 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TOE1Q96GM8 510 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RBM18Q96H35 190 aaKnown RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SLC25A18Q9H1K4 315 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PLEKHA1Q9HB21 404 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TEKT2Q9UIF3 430 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MMP17Q9ULZ9 603 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF337Q9Y3M9 751 aa14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TP53BP1Q12888 1972 aaPredicted RBP14.68□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CACNA1HO95180 2353 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF879B4DU55 563 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 C10orf142B7Z368 130 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PSMD9O00233 223 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CDC123O75794 336 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CSTAP01040 98 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPR3P46089 330 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 BTG2P78543 158 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CAMK2DQ13557 499 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PRTGQ2VWP7 1150 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TMEM255AQ5JRV8 349 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR6K6Q8NGW6 343 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GCDHQ92947 438 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HGDQ93099 445 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SEMA6CQ9H3T2 930 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF275Q9NSD4 429 aaPredicted RBP14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 UCKL1Q9NWZ5 548 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 B3GNT2Q9NY97 397 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 POMT2Q9UKY4 750 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HS3ST3A1Q9Y663 406 aa14.67□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CFAP54Q96N23 3096 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 WDFY3Q8IZQ1 3526 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 KIR2DS5A0A0G2JLQ3 304 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 A0A0G2JNG1 304 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 IFITM5A6NNB3 132 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 FAM171A2A8MVW0 826 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 KIR2DS3K7RE56 304 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GMDSO60547 372 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CTNSO60931 367 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF254O75437 659 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GLCEO94923 617 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HPXP02790 462 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TPOP07202 933 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CDKN2AP42771 156 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MAT1AQ00266 395 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 STX4Q12846 297 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 IL10RAQ13651 578 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 KIR2DS5Q14953 304 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OOSP2Q86WS3 158 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF527Q8NB42 609 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 AVL9Q8NBF6 648 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 OR56B4Q8NH76 319 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 EDAQ92838 391 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPX7Q96SL4 187 aaPredicted RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 G6PC3Q9BUM1 346 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 Q9N2J8 555 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PTTG3PQ9NZH4 202 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MRPL15Q9P015 296 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF346Q9UL40 294 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CYP8B1Q9UNU6 501 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZNF281Q9Y2X9 895 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GPR179Q6PRD1 2367 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 LEUTXA8MZ59 168 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZFPL1O95159 310 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 RNH1P13489 461 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ICAM2P13598 275 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 GRPRP30550 384 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 CCR9P51686 369 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 PSMD4P55036 377 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 ZP1P60852 638 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 MRPS21P82921 87 aaKnown RBP14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 HSF2Q03933 536 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 SIGLEC14Q08ET2 396 aa14.66□□□□□ -0.06
MSH5-SAPCD1-208ENST00000498473 TEX261Q6UWH6 196 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms