RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ZNF589Q86UQ0 364 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 PPP1R27Q86WC6 154 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 VRK2Q86Y07 508 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 ERI1Q8IV48 349 aaKnown RBP3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 FAM58AQ8N1B3 248 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 ALLCQ8N6M5 410 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 DNAAF3Q8N9W5 541 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 TRPV1Q8NER1 839 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 OR2A12Q8NGT7 310 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 NDNFQ8TB73 568 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 ARNTL2Q8WYA1 636 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 ZNF184Q99676 751 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 NSRP1Q9H0G5 558 aaKnown RBP3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 RHBGQ9H310 441 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 PPDPFQ9H3Y8 114 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 SMYD3Q9H7B4 428 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 POLE4Q9NR33 117 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 PSMC3IPQ9P2W1 217 aaPredicted RBP3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 GNG12Q9UBI6 72 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 RPS6KB2Q9UBS0 482 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 GSTK1Q9Y2Q3 226 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 RHBDD3Q9Y3P4 386 aa3.39□□□□□ -1.87
HMGB1P38-201ENST00000490557 ATP10DQ9P241 1426 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TRAV6A0A075B6T7 132 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 FAM231BA6NCW3 169 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 IQCF5A8MTL0 148 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TRIM49D1C9J1S8 452 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TEX46H3BTG2 121 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 BTN3A3O00478 584 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 FCN1O00602 326 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 BCKDKO14874 412 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 CST1P01037 141 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 SEMG1P04279 462 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 CCNB1P14635 433 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 GSTM3P21266 225 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 RORAP35398 523 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MRPS15P82914 257 aaKnown RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 SLC10A7Q0GE19 358 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 ST3GAL3Q11203 375 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 ATXN7L3Q14CW9 347 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 NCF4Q15080 339 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 LRRC36Q1X8D7 754 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MICBQ29980 383 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 BEX5Q5H9J7 111 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 EOGTQ5NDL2 527 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 OTPQ5XKR4 325 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TWF2Q6IBS0 349 aaKnown RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 FAM71F2Q6NXP2 309 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TMEM220Q6QAJ8 160 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 APTXQ7Z2E3 356 aaKnown RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TMEM17Q86X19 198 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 NKAIN4Q8IVV8 208 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 KRT222Q8N1A0 295 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 GABRG1Q8N1C3 465 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MTURNQ8N3F0 131 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 RNF175Q8N4F7 328 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 OR5T3Q8NGG3 340 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 OR51G2Q8NGK0 314 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 ANGPTL6Q8NI99 470 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 ELMO1Q92556 727 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MYLPFQ96A32 169 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 C10orf35Q96D05 121 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TM4SF19Q96DZ7 209 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MS4A14Q96JA4 679 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MTMR9Q96QG7 549 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 OR5B2Q96R09 309 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 UQCC2Q9BRT2 126 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 BBS2Q9BXC9 721 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 TEKT3Q9BXF9 490 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 FRMD8P1Q9BZ68 369 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 AZI2Q9H6S1 392 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 PAK1IP1Q9NWT1 392 aaPredicted RBP3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 IKZF2Q9UKS7 526 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 VANGL2Q9ULK5 521 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 MAD1L1Q9Y6D9 718 aa3.38□□□□□ -1.87
HMGB1P38-201ENST00000490557 IGHV7-81A0A0B4J1V7 117 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 A0A1B0GUH1 482 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 PDZK1P1A8MUH7 402 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 K7ENP7 123 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 MMP23AO75900 390 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 KLHL2O95198 593 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 SMC2O95347 1197 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 ETS2P15036 469 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 CCNOP22674 350 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 HNRNPH3P31942 346 aaKnown RBP3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 YWHABP31946 246 aaKnown RBP3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 S100A5P33763 92 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 CASP4P49662 377 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 CCNG1P51959 295 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 LIM2P55344 173 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 UBE2IP63279 158 aaKnown RBP3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 TNNC1P63316 161 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 NDUFA9Q16795 377 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 GGTA1PQ4G0N0 100 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 FAM120AOSQ5T036 256 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 LIPNQ5VXI9 398 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 SPECC1LQ69YQ0 1117 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 UTS2BQ765I0 119 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 H2BFWTQ7Z2G1 175 aa3.37□□□□□ -1.87
HMGB1P38-201ENST00000490557 CCDC65Q8IXS2 484 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms