RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 RBMS3Q6XE24 437 aaKnown RBP13.83□□□□□ -0.2
USP48-210ENST00000489108 TRMT10CQ7L0Y3 403 aaKnown RBP13.83□□□□□ -0.2
USP48-210ENST00000489108 ANKRD46Q86W74 232 aa13.83□□□□□ -0.2
USP48-210ENST00000489108 HOMEZQ8IX15 550 aa13.83□□□□□ -0.2
USP48-210ENST00000489108 NOA1Q8NC60 698 aaKnown RBP13.83□□□□□ -0.2
USP48-210ENST00000489108 LRRC58Q96CX6 371 aa13.83□□□□□ -0.2
USP48-210ENST00000489108 ZNF75AQ96N20 296 aa13.83□□□□□ -0.2
USP48-210ENST00000489108 SLC38A1Q9H2H9 487 aa13.83□□□□□ -0.2
USP48-210ENST00000489108 HMGN4O00479 90 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 NUDT17P0C025 328 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 TFPTP0C1Z6 253 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 CD79AP11912 226 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 IL7RP16871 459 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 ZNF43P17038 809 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 FXNQ16595 210 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 GKAP1Q5VSY0 366 aaPredicted RBP13.82□□□□□ -0.2
USP48-210ENST00000489108 GSPT2Q8IYD1 628 aaKnown RBP13.82□□□□□ -0.2
USP48-210ENST00000489108 CADM2Q8N3J6 435 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 TAF15Q92804 592 aaKnown RBP eCLIP13.82□□□□□ -0.2
USP48-210ENST00000489108 SLC25A36Q96CQ1 311 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 RAB39BQ96DA2 213 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 ZNF385DQ9H6B1 395 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 MTHFD2LQ9H903 347 aaPredicted RBP13.82□□□□□ -0.2
USP48-210ENST00000489108 RLIMQ9NVW2 624 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 ARMCX1Q9P291 453 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 ZDHHC2Q9UIJ5 367 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 RCE1Q9Y256 329 aa13.82□□□□□ -0.2
USP48-210ENST00000489108 A0A1W2PPW3 197 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 POM121CA8CG34 1229 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 ZNF99A8MXY4 864 aaPredicted RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 COPEO14579 308 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 PNMTP11086 282 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 ZNF14P17017 642 aaPredicted RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 ACAA2P42765 397 aaKnown RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 GSG1Q2KHT4 349 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 GLIPR1L2Q4G1C9 344 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 PHYHD1Q5SRE7 291 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 C17orf53Q8N3J3 647 aaPredicted RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 TUBGCP3Q96CW5 907 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 NEURL3Q96EH8 262 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 TRNT1Q96Q11 434 aaKnown RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 DPY30Q9C005 99 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 MED29Q9NX70 200 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 SEC14L4Q9UDX3 406 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 MARCOQ9UEW3 520 aaPredicted RBP13.81□□□□□ -0.2
USP48-210ENST00000489108 NOTCH1P46531 2555 aa13.81□□□□□ -0.2
USP48-210ENST00000489108 PRSS51A0A1B0GVH4 220 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 DNAJC9-AS1A6NH13 148 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 FTCDNL1E5RQL4 147 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 M0R3G1 203 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 NPHS1O60500 1241 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 NPIPB7O75200 414 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 IGHV2-5P01817 119 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 RPS4Y1P22090 263 aaKnown RBP13.8□□□□□ -0.2
USP48-210ENST00000489108 CHI3L1P36222 383 aaPredicted RBP13.8□□□□□ -0.2
USP48-210ENST00000489108 CCL8P80075 99 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 GALK2Q01415 458 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 GNA13Q14344 377 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 TUSC1Q2TAM9 212 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 HIST2H2BDQ6DRA6 164 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 WBP2NLQ6ICG8 309 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 LRRC74BQ6ZQY2 392 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 DOK3Q7L591 496 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 ZNF440Q8IYI8 595 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 CNPY4Q8N129 248 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 OR8J2Q8NGG1 315 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 MFSD8Q8NHS3 518 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 C1orf147Q96MC9 270 aaPredicted RBP13.8□□□□□ -0.2
USP48-210ENST00000489108 OXGR1Q96P68 337 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 B3GAT1Q9P2W7 334 aa13.8□□□□□ -0.2
USP48-210ENST00000489108 ZNF346Q9UL40 294 aaKnown RBP13.8□□□□□ -0.2
USP48-210ENST00000489108 AHSA1O95433 338 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 CLPTM1O96005 669 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 DBIP07108 87 aaKnown RBP13.79□□□□□ -0.2
USP48-210ENST00000489108 GATA3P23771 443 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 ALDH3A1P30838 453 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 RAD52P43351 418 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 PTDSS1P48651 473 aaKnown RBP13.79□□□□□ -0.2
USP48-210ENST00000489108 AQP5P55064 265 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 RPS23P62266 143 aaKnown RBP13.79□□□□□ -0.2
USP48-210ENST00000489108 IL13RA1P78552 427 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 C1DQ13901 141 aaKnown RBP13.79□□□□□ -0.2
USP48-210ENST00000489108 ATG16L1Q676U5 607 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 RNF130Q86XS8 419 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 C4orf33Q8N1A6 199 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 PIK3C3Q8NEB9 887 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 OR2M2Q96R28 347 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 SLC35A5Q9BS91 424 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 SLITRK2Q9H156 845 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 TAAR3PQ9P1P4 343 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 MID2Q9UJV3 735 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 ZNF281Q9Y2X9 895 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 WIPI2Q9Y4P8 454 aa13.79□□□□□ -0.2
USP48-210ENST00000489108 C17orf100A8MU93 164 aa13.78□□□□□ -0.2
USP48-210ENST00000489108 PRG2P13727 222 aa13.78□□□□□ -0.2
USP48-210ENST00000489108 KRT4P19013 534 aa13.78□□□□□ -0.2
USP48-210ENST00000489108 CRYBB2P43320 205 aa13.78□□□□□ -0.2
USP48-210ENST00000489108 RPS5P46782 204 aaKnown RBP13.78□□□□□ -0.2
USP48-210ENST00000489108 COPZ1P61923 177 aa13.78□□□□□ -0.2
USP48-210ENST00000489108 RAB1AP62820 205 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms