RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 MRPL19P49406 292 aaKnown RBP17.17■□□□□ 0.34
COL9A3-210ENST00000472880 ARF1P84077 181 aaKnown RBP17.17■□□□□ 0.34
COL9A3-210ENST00000472880 EFNB3Q15768 340 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 ADIPOQQ15848 244 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 LRIF1Q5T3J3 769 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 LSMEM1Q8N8F7 131 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 ANKS4BQ8N8V4 417 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 PIK3C3Q8NEB9 887 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 DNAJA4Q8WW22 397 aaPredicted RBP17.17■□□□□ 0.34
COL9A3-210ENST00000472880 SEC61A2Q9H9S3 476 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 SLC25A37Q9NYZ2 338 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 SELENONQ9NZV5 590 aa17.17■□□□□ 0.34
COL9A3-210ENST00000472880 ARFGEF3Q5TH69 2177 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 TRAV36DV7A0A075B6V5 113 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 VWC2LB2RUY7 222 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 SASH3O75995 380 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 IGKV3-15P01624 115 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 HTR2AP28223 471 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 CALCRP30988 508 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 PPOXP50336 477 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 IDH3GP51553 393 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-210ENST00000472880 CDK6Q00534 326 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 CEACAM16Q2WEN9 425 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 REEP3Q6NUK4 255 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 DHRS4L2Q6PKH6 230 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 H1FNTQ75WM6 255 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-210ENST00000472880 PHC2Q8IXK0 858 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 NUP37Q8NFH4 326 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 RNF217Q8TC41 542 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 LRRC8CQ8TDW0 803 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 TAAR8Q969N4 342 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 SPDL1Q96EA4 605 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 C7orf26Q96N11 449 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 PLK3Q9H4B4 646 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 CRLF2Q9HC73 371 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 GPR35Q9HC97 309 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 CCDC167Q9P0B6 97 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 TESQ9UGI8 421 aaKnown RBP17.16■□□□□ 0.34
COL9A3-210ENST00000472880 FBXO9Q9UK97 447 aaPredicted RBP17.16■□□□□ 0.34
COL9A3-210ENST00000472880 KCNS2Q9ULS6 477 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 MXRA5Q9NR99 2828 aa17.16■□□□□ 0.34
COL9A3-210ENST00000472880 YLPM1P49750 1951 aaKnown RBP17.15■□□□□ 0.34
COL9A3-210ENST00000472880 LOC390937A0A1W2PQ73 354 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 PHF1O43189 567 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-210ENST00000472880 LMX1BO60663 402 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 TGDSO95455 350 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 CELA3BP08861 270 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 APEHP13798 732 aaKnown RBP17.15■□□□□ 0.34
COL9A3-210ENST00000472880 NQO1P15559 274 aaKnown RBP17.15■□□□□ 0.34
COL9A3-210ENST00000472880 CBR1P16152 277 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 CBLP22681 906 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 CAPZA2P47755 286 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 NPRL3Q12980 569 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 MFSD13AQ14CX5 517 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 FAM166AQ6J272 317 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 ULK3Q6PHR2 472 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 BLOC1S3Q6QNY0 202 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 NET1Q7Z628 596 aaPredicted RBP17.15■□□□□ 0.34
COL9A3-210ENST00000472880 UEVLDQ8IX04 471 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 MSRB3Q8IXL7 192 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 ADPRHL1Q8NDY3 354 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 SLC47A1Q96FL8 570 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 OR2M2Q96R28 347 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 EPYCQ99645 322 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 RAB1BQ9H0U4 201 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 ZNF442Q9H7R0 627 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 CHODLQ9H9P2 273 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 KLHL14Q9P2G3 628 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 SLC13A4Q9UKG4 626 aa17.15■□□□□ 0.34
COL9A3-210ENST00000472880 IGKV1D-42A0A075B6H8 117 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 PRORSD1PA6NEY8 169 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 VSTM5A8MXK1 200 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 TRAF3IP2O43734 574 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-210ENST00000472880 ERCC1P07992 297 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-210ENST00000472880 ARR3P36575 388 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 RGS8P57771 180 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-210ENST00000472880 SCARB2Q14108 478 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 IQCCQ4KMZ1 466 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 FAM91A1Q658Y4 838 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 MYPOPQ86VE0 399 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-210ENST00000472880 COMTD1Q86VU5 262 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 FUNDC1Q8IVP5 155 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 CCDC36Q8IYA8 594 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 TMEM123Q8N131 208 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 DYDC1Q8WWB3 177 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 FOXN4Q96NZ1 517 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF607Q96SK3 696 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 ASPNQ9BXN1 380 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 TMEM27Q9HBJ8 222 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 VAPAQ9P0L0 249 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 SLAMF8Q9P0V8 285 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.14■□□□□ 0.33
COL9A3-210ENST00000472880 USP22Q9UPT9 525 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 CORO2BQ9UQ03 480 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 CORINQ9Y5Q5 1042 aa17.14■□□□□ 0.33
COL9A3-210ENST00000472880 LOC100289279A0A1B0GTE1 492 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 LOC102725191A0A1B0GVB3 256 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 ZNF99A8MXY4 864 aaPredicted RBP17.13■□□□□ 0.33
COL9A3-210ENST00000472880 hCG_2039718K7EN88 272 aa17.13■□□□□ 0.33
COL9A3-210ENST00000472880 M0R3G1 203 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms