RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ANXA8L1Q5VT79 327 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 OR4F3Q6IEY1 312 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 HEPHL1Q6MZM0 1159 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 WDR93Q6P2C0 686 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 TMPPEQ6ZT21 453 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 Q6ZT83 130 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 EIF3MQ7L2H7 374 aaKnown RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 SSX8Q7RTT4 187 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 C16orf62Q7Z3J2 963 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 CLECL1Q8IZS7 167 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ZNF781Q8N8C0 355 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ATP6V1C2Q8NEY4 427 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 RFWD2Q8NHY2 731 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 AKAP1Q92667 903 aaKnown RBP eCLIP6.4□□□□□ -1.38
USP54-208ENST00000461520 TESCQ96BS2 214 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ZNF524Q96C55 264 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SLC35G5Q96KT7 338 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 THUMPD3Q9BV44 507 aaKnown RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 POTEKPQ9BYX7 375 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 DPY30Q9C005 99 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 POLE3Q9NRF9 147 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SERINC1Q9NRX5 453 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 MKLN1Q9UL63 735 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ZDHHC8Q9ULC8 765 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SLC35A3Q9Y2D2 325 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 RAP2CQ9Y3L5 183 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 RNF115Q9Y4L5 304 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SPEF1Q9Y4P9 236 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 RAI1Q7Z5J4 1906 aaPredicted RBP6.4□□□□□ -1.39
USP54-208ENST00000461520 ZANQ9Y493 2812 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 IGHV3-15A0A0B4J1V0 119 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ZNF814B7Z6K7 855 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ANKRD28O15084 1053 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 SMAD9O15198 467 aaKnown RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 SLC16A6O15403 523 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 RGS16O15492 202 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 ITM2AO43736 263 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 KIAA0513O60268 411 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 H6PDO95479 791 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 FESP07332 822 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 MYZAPP0CAP1 466 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 UBTFL6P0CB48 400 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 DRD4P21917 467 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 UQCRC2P22695 453 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 PGM1P36871 562 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 APOBEC1P41238 236 aaKnown RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 OR3A2P47893 321 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 DIO1P49895 249 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 RPL14P50914 215 aaKnown RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 ATP5J2P56134 94 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 PDK3Q15120 406 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 TSC22D1Q15714 1073 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 CHI3L2Q15782 390 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ETFDHQ16134 617 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 KRT71Q3SY84 523 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ATAD3BQ5T9A4 648 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 TYW3Q6IPR3 259 aaKnown RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 BHLHA15Q7RTS1 189 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 MREGQ8N565 214 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 FAM71CQ8NEG0 241 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 OR4A15Q8NGL6 344 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 LILRB1Q8NHL6 650 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 RAB3IL1Q8TBN0 382 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 XAGE5Q8WWM1 108 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 TRMT61AQ96FX7 289 aaKnown RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 PKNOX2Q96KN3 472 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 OR5B2Q96R09 309 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 OR51I1Q9H343 314 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 SERTAD4Q9NUC0 356 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 ACER3Q9NUN7 267 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 HAO1Q9UJM8 370 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 LAMP3Q9UQV4 416 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 WDR45Q9Y484 360 aa6.39□□□□□ -1.39
USP54-208ENST00000461520 SPIN1Q9Y657 262 aaPredicted RBP6.39□□□□□ -1.39
USP54-208ENST00000461520 ANK3Q12955 4377 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 IGKV3D-15A0A087WSY6 115 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 A0A1W2PP18 115 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 WDR91A4D1P6 747 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 INAFM1C9JVW0 142 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 E9PBE3 544 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 SULT2B1O00204 365 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CLOCKO15516 846 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 DNPH1O43598 174 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 PGM3O95394 542 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CPSF4O95639 269 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 HNRNPCP07910 306 aaKnown RBP eCLIP6.38□□□□□ -1.39
USP54-208ENST00000461520 DANCRP0C864 163 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 DHRS4L1P0CG22 281 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 OR12D1P0DN82 309 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 LBPP18428 481 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 COX5AP20674 150 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 SLC1A6P48664 564 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CLK1P49759 484 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 KHKP50053 298 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CLNS1AP54105 237 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 KRTAP10-11P60412 298 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 TXNL4AP83876 142 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 PPP2R2BQ00005 443 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 BSPH1Q075Z2 132 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms