RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 ZNF417Q8TAU3 575 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ABHD4Q8TB40 342 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ASB15Q8WXK1 588 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ZNF587Q96SQ5 575 aaPredicted RBP12.39□□□□□ -0.43
CLK3-203ENST00000454830 INIPQ9NRY2 104 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 NCDNQ9UBB6 729 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 PLEKHB1Q9UF11 243 aaPredicted RBP12.39□□□□□ -0.43
CLK3-203ENST00000454830 COPS3Q9UNS2 423 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ZNF41P51814 821 aaPredicted RBP12.39□□□□□ -0.43
CLK3-203ENST00000454830 LIMK1P53667 647 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ACTA2P62736 377 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ACTG2P63267 376 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 FAM69AQ5T7M9 428 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 MZT2AQ6P582 158 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 MAMSTRQ6ZN01 415 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 TMEM91Q6ZNR0 172 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 ZNF433Q8N7K0 673 aaPredicted RBP12.39□□□□□ -0.43
CLK3-203ENST00000454830 OR2T4Q8NH00 348 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 TSPAN32Q96QS1 320 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 CCNL2Q96S94 520 aaPredicted RBP12.39□□□□□ -0.43
CLK3-203ENST00000454830 FKRPQ9H9S5 495 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 LAMP5Q9UJQ1 280 aa12.39□□□□□ -0.43
CLK3-203ENST00000454830 TMEM221A6NGB7 291 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 A8MVM7 634 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 G3V3Y1 287 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 M0R296 226 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 DCTN6O00399 190 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 FADS1O60427 444 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 GLCEO94923 617 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 INPP5JQ15735 1006 aaPredicted RBP12.38□□□□□ -0.43
CLK3-203ENST00000454830 SLC22A8Q8TCC7 542 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ADAM19Q9H013 955 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ZMIZ1Q9ULJ6 1067 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 SLC6A5Q9Y345 797 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 A0A1W2PQD3 144 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 SHISA3A0PJX4 238 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 MASP2O00187 686 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 IDH3BO43837 385 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ASAH2BP0C7U1 165 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 FGF9P31371 208 aaPredicted RBP12.38□□□□□ -0.43
CLK3-203ENST00000454830 RGS19P49795 217 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 TOMM20Q15388 145 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 C11orf91Q3C1V1 193 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 DPY19L4Q7Z388 723 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ADGRG3Q86Y34 549 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ORAI1Q96D31 301 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 COQ7Q99807 217 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 MYOTQ9UBF9 498 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 J3QRE1 110 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 TFECO14948 347 aaPredicted RBP12.38□□□□□ -0.43
CLK3-203ENST00000454830 TDGF1P13385 188 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 SIRPAP78324 504 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 ACKR1Q16570 336 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 NUP54Q7Z3B4 507 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 OR4K17Q8NGC6 315 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 PELI1Q96FA3 418 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 NPAS1Q99742 590 aa12.38□□□□□ -0.43
CLK3-203ENST00000454830 MRPS7Q9Y2R9 242 aaKnown RBP12.38□□□□□ -0.43
CLK3-203ENST00000454830 IGLV3-12A0A075B6K2 115 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SLC16A7O60669 478 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 LCN1P31025 176 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 OTX2P32243 289 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 OR10A3P58181 314 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 RPS4XP62701 263 aaKnown RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 CNIH2Q6PI25 160 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 NFAM1Q8NET5 270 aaPredicted RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 CMKLR1Q99788 373 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 RPH3AQ9Y2J0 694 aaPredicted RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 CFAP54Q96N23 3096 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 IQCMA0A1B0GVH7 501 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 FAM47E-STBD1D6RA91 191 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SOX2P48431 317 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 IL11RAQ14626 422 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 MESTQ5EB52 335 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SLC35D2Q76EJ3 337 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 TMEM156Q8N614 296 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 ZNF441Q8N8Z8 693 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 NXPE2Q96DL1 559 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 ARL5BQ96KC2 179 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 TBCCD1Q9NVR7 557 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 HAO2Q9NYQ3 351 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 VSTM2BA6NLU5 285 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 KRT8P05787 483 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SPARCP09486 303 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SLC2A2P11168 524 aaPredicted RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 SFTPDP35247 375 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 RAB15P59190 212 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 SQSTM1Q13501 440 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 RNASE12Q5GAN4 147 aaKnown RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 TRIQKQ629K1 86 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 VASNQ6EMK4 673 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 WDR77Q9BQA1 342 aaPredicted RBP12.37□□□□□ -0.43
CLK3-203ENST00000454830 PISDQ9UG56 409 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 NOX1Q9Y5S8 564 aa12.37□□□□□ -0.43
CLK3-203ENST00000454830 CNOT1A5YKK6 2376 aaKnown RBP12.36□□□□□ -0.43
CLK3-203ENST00000454830 IL11P20809 199 aa12.36□□□□□ -0.43
CLK3-203ENST00000454830 MAGEB1P43366 347 aa12.36□□□□□ -0.43
CLK3-203ENST00000454830 FOXF1Q12946 379 aa12.36□□□□□ -0.43
CLK3-203ENST00000454830 OR6V1Q8N148 313 aa12.36□□□□□ -0.43
CLK3-203ENST00000454830 ARIH2OSQ8N7S6 290 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms