RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CCDC134Q9H6E4 229 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 NANOGQ9H9S0 305 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 FGFR1OP2Q9NVK5 253 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 SELENONQ9NZV5 590 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 ABCA2Q9BZC7 2435 aa10.53□□□□□ -0.72
USP40-210ENST00000454354 BBIP1A8MTZ0 92 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 MS4A18H0YCH9 400 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 M0QX08 132 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CHP2O43745 196 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 AKAP8O43823 692 aaKnown RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 KRT33AO76009 404 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 LY6G6DO95868 133 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 NPPAP01160 153 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 HOXB1P14653 301 aaPredicted RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 ARFIP2P53365 341 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CRYBA2P53672 197 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CLEC12BQ2HXU8 276 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 VMACQ2NL98 169 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 MS4A18Q3C1V0 323 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 C3orf36Q3SXR2 165 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 ZNF544Q6NX49 715 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 NHLRC1Q6VVB1 395 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CCDC80Q76M96 950 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CALHM3Q86XJ0 350 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 TMEM123Q8N131 208 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 DEPDC4Q8N2C3 294 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 MUC15Q8N387 334 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 OR6T1Q8NGN1 323 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 RASSF5Q8WWW0 418 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 BCL2L2Q92843 193 aaPredicted RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 TAMM41Q96BW9 452 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 OR2M2Q96R28 347 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 MCHR1Q99705 422 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 C1QTNF6Q9BXI9 259 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 PCDHAC1Q9H158 963 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 FKRPQ9H9S5 495 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 BARX1Q9HBU1 254 aaPredicted RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 MOV10Q9HCE1 1003 aaKnown RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 SAR1AQ9NR31 198 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CBLN4Q9NTU7 201 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 CRNNQ9UBG3 495 aaPredicted RBP10.52□□□□□ -0.73
USP40-210ENST00000454354 POU2F3Q9UKI9 436 aa10.52□□□□□ -0.73
USP40-210ENST00000454354 ATP6V1G2-DDX39BF2Z307 99 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 SMAD7O15105 426 aaKnown RBP10.51□□□□□ -0.73
USP40-210ENST00000454354 SLC43A1O75387 559 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 LYPD3O95274 346 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 HPRP00739 348 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 CDH2P19022 906 aaPredicted RBP10.51□□□□□ -0.73
USP40-210ENST00000454354 ROR2Q01974 943 aaKnown RBP10.51□□□□□ -0.73
USP40-210ENST00000454354 KLF10Q13118 480 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 TNK1Q13470 666 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 CYLC2Q14093 348 aaPredicted RBP10.51□□□□□ -0.73
USP40-210ENST00000454354 MAPRE2Q15555 327 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 ENTPD8Q5MY95 495 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 REP15Q6BDI9 236 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 HMBOX1Q6NT76 420 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 ANKRD16Q6P6B7 361 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 WDR88Q6ZMY6 472 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 UEVLDQ8IX04 471 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 FBXL14Q8N1E6 418 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 FAM169BQ8N8A8 192 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 PIK3C3Q8NEB9 887 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 OR4D11Q8NGI4 311 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 LRRC58Q96CX6 371 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 MOGAT1Q96PD6 335 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 SLC38A2Q96QD8 506 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 SH3GL1Q99961 368 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 ZNF426Q9BUY5 554 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 ASPNQ9BXN1 380 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 GPR35Q9HC97 309 aa10.51□□□□□ -0.73
USP40-210ENST00000454354 MRPL39Q9NYK5 338 aaKnown RBP10.51□□□□□ -0.73
USP40-210ENST00000454354 ANK3Q12955 4377 aaKnown RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 IGHV1-18A0A0C4DH31 117 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 CPSF4LA6NMK7 179 aaKnown RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 H7C417 338 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 MRASO14807 208 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 SLC22A2O15244 555 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 NDUFS7O75251 213 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 MT-ATP6P00846 226 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 IGLV1-44P01699 117 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 THY1P04216 161 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 HLA-DOBP13765 273 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 NQO1P15559 274 aaKnown RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 CBLP22681 906 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 ACVR1BP36896 505 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 FABP6P51161 128 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 GUCY1A3Q02108 690 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 POU3F1Q03052 451 aaPredicted RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 PUDPQ08623 228 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 C1DQ13901 141 aaKnown RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 VEZF1Q14119 521 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 RABL3Q5HYI8 236 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 Q71RC1 249 aaPredicted RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 PXKQ7Z7A4 578 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 TSPYL5Q86VY4 417 aaPredicted RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 RBM45Q8IUH3 476 aaKnown RBP10.5□□□□□ -0.73
USP40-210ENST00000454354 C20orf196Q8IYI0 205 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 GPR137CQ8N3F9 429 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 RNF217Q8TC41 542 aa10.5□□□□□ -0.73
USP40-210ENST00000454354 ADAMTS16Q8TE57 1224 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms