RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 UFD1Q92890 307 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 C12orf42Q96LP6 360 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 IMMP1LQ96LU5 166 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 CLCC1Q96S66 551 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 NPY6RQ99463 290 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 ZBTB18Q99592 522 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 TRIM62Q9BVG3 475 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 PARD6BQ9BYG5 372 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 GCOM2Q9BZD3 368 aaPredicted RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 ACTR6Q9GZN1 396 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 ZDHHC11Q9H8X9 412 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 FN3KRPQ9HA64 309 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 MCCC2Q9HCC0 563 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 HYPKQ9NX55 129 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 NYAP2Q9P242 653 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 DCDC2Q9UHG0 476 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 BTNL2Q9UIR0 455 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 COPS3Q9UNS2 423 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 DDX49Q9Y6V7 483 aaKnown RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 DISP2A7MBM2 1401 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 UBR1Q8IWV7 1749 aa2.39□□□□□ -2.03
VPS41-207ENST00000439468 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.39□□□□□ -2.03
VPS41-207ENST00000439468 MEGF6O75095 1541 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 ADAMTS7Q9UKP4 1686 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 IGHV3OR16-13A0A075B7E8 117 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 IGHV1OR21-1A0A087WYE8 117 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 IQANK1A0A1B0GTG1 560 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 ARHGEF35A5YM69 484 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 RBMY1BA6NDE4 496 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 RBMY1EA6NEQ0 496 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 A8MUA0 341 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 A8MXQ7 604 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 RTL8CO15255 209 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 PLXNC1O60486 1568 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 TNFSF13O75888 250 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 SCGNO76038 276 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 SERPINA3P01011 423 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 P04436 131 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 RBMY1DP0C7P1 496 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 RBMY1A1P0DJD3 496 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 CTRLP40313 264 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 VDAC2P45880 294 aaPredicted RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 GPM6AP51674 278 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 NCBP1Q09161 790 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 BST1Q10588 318 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 PSG7Q13046 419 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 PDIA2Q13087 525 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 DAZ2Q13117 558 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 WRNQ14191 1432 aaPredicted RBP eCLIP2.38□□□□□ -2.03
VPS41-207ENST00000439468 SAMD4BQ5PRF9 694 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 MARCH8Q5T0T0 291 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 TIGD3Q6B0B8 471 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 C1orf94Q6P1W5 598 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 TMIGD1Q6UXZ0 262 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 HSDL2Q6YN16 418 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 Q6ZN92 141 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 Q6ZVH6 145 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 RALGPS2Q86X27 583 aaPredicted RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 SAMD9LQ8IVG5 1584 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 LRRC75A-AS1Q8N1F1 130 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 ACOT4Q8N9L9 421 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 OR9G1Q8NH87 305 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 FANK1Q8TC84 345 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 ARPC1AQ92747 370 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 RDH5Q92781 318 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.38□□□□□ -2.03
VPS41-207ENST00000439468 CXorf40BQ96DE9 158 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 SEC22AQ96IW7 307 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 ROPN1BQ9BZX4 212 aaPredicted RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 C20orf85Q9H1P6 137 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 NXF3Q9H4D5 531 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 SH2D2AQ9NP31 389 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 DAZ3Q9NR90 486 aaKnown RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 ANAPC11Q9NYG5 84 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 C6orf203Q9P0P8 240 aaPredicted RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 EXTL2Q9UBQ6 330 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 KCNIP3Q9Y2W7 256 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 SZT2Q5T011 3432 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 CACNA1AO00555 2505 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 COL22A1Q8NFW1 1626 aaPredicted RBP2.38□□□□□ -2.03
VPS41-207ENST00000439468 A2MP01023 1474 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 SH3TC1Q8TE82 1336 aa2.38□□□□□ -2.03
VPS41-207ENST00000439468 CTTNBP2Q8WZ74 1663 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 ABCC3O15438 1527 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 PRDM15P57071 1507 aaPredicted RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 TMEM94Q12767 1356 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 LTBP1Q14766 1721 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 ARHGEF28Q8N1W1 1705 aaKnown RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 MYO5CQ9NQX4 1742 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 UGGT1Q9NYU2 1555 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 IGLV3-22A0A075B6J6 115 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 HELTA6NFD8 242 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 E9PBE3 544 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 HCRTR1O43613 425 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 NPIPB7O75200 414 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 TSPAN12O95859 305 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 MOSP00540 346 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 DBTP11182 482 aaKnown RBP2.37□□□□□ -2.03
VPS41-207ENST00000439468 ETS2P15036 469 aa2.37□□□□□ -2.03
VPS41-207ENST00000439468 RFC4P35249 363 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms