RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 HIST2H3PS2Q5TEC6 136 aa14.26□□□□□ -0.13
PTPRF-206ENST00000429895 SIRT6Q8N6T7 355 aa14.26□□□□□ -0.13
PTPRF-206ENST00000429895 OR6T1Q8NGN1 323 aa14.26□□□□□ -0.13
PTPRF-206ENST00000429895 ELP4Q96EB1 424 aa14.26□□□□□ -0.13
PTPRF-206ENST00000429895 DEFB127Q9H1M4 99 aa14.26□□□□□ -0.13
PTPRF-206ENST00000429895 FUOMA2VDF0 154 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 OR7A17O14581 309 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ALDOCP09972 364 aaKnown RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 HTR2CP28335 458 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 HACD4Q5VWC8 232 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 SLC38A5Q8WUX1 472 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 UHRF2Q96PU4 802 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 SLA2Q9H6Q3 261 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 CDHR4A6H8M9 788 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 FZD7O75084 574 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 PMP2P02689 132 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 CYB561P49447 251 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 RPS25P62851 125 aaKnown RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 TSPAN31Q12999 210 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 KCNAB1Q14722 419 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 KCNIP4Q6PIL6 250 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 OLIG3Q7RTU3 272 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 VRK3Q8IV63 474 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 MISPQ8IVT2 679 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 KLHDC9Q8NEP7 349 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 FAM174AQ8TBP5 190 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 TMEM255BQ8WV15 326 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 SLC22A12Q96S37 553 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 CSNK1G1Q9HCP0 422 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 C1GALT1Q9NS00 363 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 K7EPK0 472 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 NFYAP23511 347 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 THBS3P49746 956 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 HSF5Q4G112 596 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 IL34Q6ZMJ4 242 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF546Q86UE3 836 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 LRRC28Q86X40 367 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 PGBD5Q8N414 524 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 FAM71E2Q8N5Q1 922 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 TXN2Q99757 166 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 SLC22A23A1A5C7 686 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 NDUFB7P17568 137 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ADRA1AP35348 466 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 MFGE8Q08431 387 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 LSAMPQ13449 338 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF468Q5VIY5 522 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF767PQ75MW2 155 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 OR7G1Q8NGA0 311 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 PBX4Q9BYU1 374 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ADAMTS5Q9UNA0 930 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 MYH11P35749 1972 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF732B4DXR9 585 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 AQP7O14520 342 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 HEXAP06865 529 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 PM20D2Q8IYS1 436 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 TMEM217Q8N7C4 229 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 VN1R2Q8NFZ6 395 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 SEC22AQ96IW7 307 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 FOXQ1Q9C009 403 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 COPS3Q9UNS2 423 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 USP3Q9Y6I4 520 aa14.25□□□□□ -0.13
PTPRF-206ENST00000429895 IGHV3-64DA0A0J9YX35 117 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 TMEM212A6NML5 194 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A6P0DMU7 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A5P0DMU8 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A7P0DMV0 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A8P0DMV1 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A9P0DMV2 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 MLLT11Q13015 90 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A2Q5DJT8 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A1Q5HYN5 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CT45A3Q8NHU0 189 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 BCL7BQ9BQE9 202 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 NXT1Q9UKK6 140 aaKnown RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 LRRC30A6NM36 301 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 GABREP78334 506 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 Q6ZTK2 550 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 FGGYQ96C11 551 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CNOT2Q9NZN8 540 aaKnown RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 A8MVM7 634 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 DVL1O14640 695 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 MRPS14O60783 128 aaKnown RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 DVL1P1P54792 670 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF91Q05481 1191 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 EBPQ15125 230 aaKnown RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 PARM1Q6UWI2 310 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 IDO2Q6ZQW0 420 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 EVA1AQ9H8M9 152 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 ADAM29Q9UKF5 820 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 NRG2O14511 850 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 HS3ST1O14792 307 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 LCMT2O60294 686 aaKnown RBP14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CACNG3O60359 315 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 YIF1BQ5BJH7 314 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 CLVS2Q5SYC1 327 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 SLC43A2Q8N370 569 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 ZNF740Q8NDX6 193 aa14.24□□□□□ -0.13
PTPRF-206ENST00000429895 GOT1L1Q8NHS2 421 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms