RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CTXN1P60606 82 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 CDC42P60953 191 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ISL1P61371 349 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 HSF1Q00613 529 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 MYBPC1Q00872 1141 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 LY6DQ14210 128 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 SLC17A1Q14916 467 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 PDK3Q15120 406 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF362Q5T0B9 420 aaPredicted RBP12.73□□□□□ -0.37
SF3B1-204ENST00000414963 TMEM225Q6GV28 225 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ABLIM2Q6H8Q1 611 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 CCDC103Q8IW40 242 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 DEPDC4Q8N2C3 294 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 IQCF1Q8N6M8 205 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 LSM14AQ8ND56 463 aaKnown RBP12.73□□□□□ -0.37
SF3B1-204ENST00000414963 SETD9Q8NE22 299 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 FBLIM1Q8WUP2 373 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF845Q96IR2 970 aaPredicted RBP12.73□□□□□ -0.37
SF3B1-204ENST00000414963 SLC38A2Q96QD8 506 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 KATNB1Q9BVA0 655 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 POLDIP3Q9BY77 421 aaKnown RBP12.73□□□□□ -0.37
SF3B1-204ENST00000414963 PRRG3Q9BZD7 231 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 TXNIPQ9H3M7 391 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 CAMK2AQ9UQM7 478 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF175Q9Y473 711 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 PRRC2CQ9Y520 2896 aaKnown RBP12.73□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF407Q9C0G0 2248 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 BOD1L1Q8NFC6 3051 aa12.73□□□□□ -0.37
SF3B1-204ENST00000414963 SURF4O15260 269 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 MPZL2O60487 215 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 CYTIPO60759 359 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 RAMP1O60894 148 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 SYNGR4O95473 234 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 F13BP05160 661 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 KLK2P20151 261 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 AHCYP23526 432 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 SDHAP31040 664 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 PTGS2P35354 604 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 PCYT1AP49585 367 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 RPL27P61353 136 aaKnown RBP12.72□□□□□ -0.37
SF3B1-204ENST00000414963 SNRPGP62308 76 aaKnown RBP12.72□□□□□ -0.37
SF3B1-204ENST00000414963 ERVK-25P63136 954 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 SF3B4Q15427 424 aaKnown RBP eCLIP12.72□□□□□ -0.372e-10■■■□□ 19.2
SF3B1-204ENST00000414963 SLC25A30Q5SVS4 291 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 CASP12Q6UXS9 341 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 CHMP1BQ7LBR1 199 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 IGFN1Q86VF2 1251 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 C8orf59Q8N0T1 100 aaPredicted RBP12.72□□□□□ -0.37
SF3B1-204ENST00000414963 KDM8Q8N371 416 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 MARVELD2Q8N4S9 558 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 ARIH2OSQ8N7S6 290 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 OR8J1Q8NGP2 316 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 RHOXF1Q8NHV9 184 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 ERMAPQ96PL5 475 aaPredicted RBP12.72□□□□□ -0.37
SF3B1-204ENST00000414963 TUBA1CQ9BQE3 449 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 RNF122Q9H9V4 155 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 CMC2Q9NRP2 79 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 ASF1BQ9NVP2 202 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 TNFRSF10DQ9UBN6 386 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 MCTS1Q9ULC4 181 aaKnown RBP12.72□□□□□ -0.37
SF3B1-204ENST00000414963 IER3IP1Q9Y5U9 82 aa12.72□□□□□ -0.37
SF3B1-204ENST00000414963 IGKV3D-15A0A087WSY6 115 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 A0A1W2PRG6 482 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF716A6NP11 495 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 NPIPA2E9PIF3 369 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 C11orf98E9PRG8 122 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 NPIPA3F8WFD2 350 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 TRAF3IP2O43734 574 aaPredicted RBP12.71□□□□□ -0.37
SF3B1-204ENST00000414963 CLIC3O95833 236 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 HOXD4P09016 255 aaPredicted RBP12.71□□□□□ -0.37
SF3B1-204ENST00000414963 HLA-DOBP13765 273 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 GABRB1P18505 474 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 DAP3P51398 398 aaKnown RBP12.71□□□□□ -0.37
SF3B1-204ENST00000414963 TEKQ02763 1124 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 MED21Q13503 144 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ACKR1Q16570 336 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 C3AR1Q16581 482 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ARMC4Q5T2S8 1044 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 FAM205BPQ63HN1 556 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 CREB3L2Q70SY1 520 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 FCRLAQ7L513 359 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 THAP5Q7Z6K1 395 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 UEVLDQ8IX04 471 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 FAM26EQ8N5C1 309 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF519Q8TB69 540 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 FAM81AQ8TBF8 368 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 RNF128Q8TEB7 428 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ROBO4Q8WZ75 1007 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 UBE2FQ969M7 185 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 TSPAN32Q96QS1 320 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 SNX18Q96RF0 628 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 DDOQ99489 341 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 GP6Q9HCN6 339 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 IMPAD1Q9NX62 359 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF226Q9NYT6 803 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 TVP23BQ9NYZ1 205 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 GRHPRQ9UBQ7 328 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 KLHL21Q9UJP4 597 aa12.71□□□□□ -0.37
SF3B1-204ENST00000414963 ZNF346Q9UL40 294 aaKnown RBP12.71□□□□□ -0.37
SF3B1-204ENST00000414963 RNF6Q9Y252 685 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms