RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 RIN1Q13671 783 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 BICRALQ6AI39 1079 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ZAR1Q86SH2 424 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 LIX1LQ8IVB5 337 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 S100A16Q96FQ6 103 aaKnown RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 MRGPRX4Q96LA9 322 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 MBOAT4Q96T53 435 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ARHGDIGQ99819 225 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 CHST11Q9NPF2 352 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 MED29Q9NX70 200 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 NDRG4Q9ULP0 352 aaKnown RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 PCDHGA10Q9Y5H3 936 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 CBR3O75828 277 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 RAB3BP20337 219 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 RPL27P61353 136 aaKnown RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 OR1C1Q15619 314 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 UNQ6126/PRO20091Q6UXV3 157 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 LRRC17Q8N6Y2 441 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 GPR119Q8TDV5 335 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 HOXB13Q92826 284 aaPredicted RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 FRMD6Q96NE9 622 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 FKRPQ9H9S5 495 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 EMC9Q9Y3B6 208 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 DCDC2BA2VCK2 349 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ALG1L2C9J202 215 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 HIST1H1CP16403 213 aaKnown RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 HTR1FP30939 366 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 NUP62P37198 522 aaPredicted RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 BMXP51813 675 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 SLC37A1P57057 533 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 GMFBP60983 142 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 HSF1Q00613 529 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ACSM3Q53FZ2 586 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ZNF585AQ6P3V2 769 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 TUBA3EQ6PEY2 450 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 ZNF704Q6ZNC4 412 aaPredicted RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 PTPMT1Q8WUK0 201 aaPredicted RBP8.29□□□□□ -1.08
LIG4-202ENST00000405925 TSSK2Q96PF2 358 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 SLC19A3Q9BZV2 496 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 C1orf198Q9H425 327 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 C12orf49Q9H741 205 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 MOKQ9UQ07 419 aa8.29□□□□□ -1.08
LIG4-202ENST00000405925 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ZAR1LA6NP61 321 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ZNF878C9JN71 531 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 SNPHO15079 494 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 GALR2O43603 387 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 MTRF1O75570 445 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 OR2T7P0C7T2 308 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 NAGAP17050 411 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FKBP2P26885 142 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 APLNRP35414 380 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FUT7Q11130 342 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FAM205BPQ63HN1 556 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 CWF19L1Q69YN2 538 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 FAHD1Q6P587 224 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FAM181AQ8N9Y4 354 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 OR2T27Q8NH04 317 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FNDC8Q8TC99 324 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 RPL3LQ92901 407 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 GIMAP5Q96F15 307 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 OR5M11Q96RB7 305 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 RASL10BQ96S79 203 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 PDCD10Q9BUL8 212 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 SLC25A18Q9H1K4 315 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 INPP5EQ9NRR6 644 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 DNAJB12Q9NXW2 375 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 VSX1Q9NZR4 365 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 AK6Q9Y3D8 172 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 CMAHPQ9Y471 501 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ANKRD36A6QL64 1941 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ZC3H12DA2A288 527 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 TTLL8A6PVC2 850 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 B4E171 279 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 GP1BAP07359 652 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ERCC1P07992 297 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 TSPAN7P41732 249 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FRKP42685 505 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 TPTEP56180 551 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 MC2RQ01718 297 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 FAM189A2Q15884 450 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 WIPI1Q5MNZ9 446 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 FAM180AQ6UWF9 173 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 ZNF813Q6ZN06 617 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 MRPL21Q7Z2W9 205 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 GALNT16Q8N428 558 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 POGLUT1Q8NBL1 392 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 NUBPLQ8TB37 319 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 C3orf49Q96BT1 292 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 GABARAPL1Q9H0R8 117 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 CMC2Q9NRP2 79 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 HHLA2Q9UM44 414 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 DTX4Q9Y2E6 619 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 COA3Q9Y2R0 106 aaPredicted RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 A0A087WUJ7 227 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 IGHV3-15A0A0B4J1V0 119 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 hCG_1807616A0A1W2PRN6 198 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 EEF1E1-BLOC1S5C9J1V9 151 aa8.28□□□□□ -1.08
LIG4-202ENST00000405925 EEF1E1O43324 174 aaKnown RBP8.28□□□□□ -1.08
LIG4-202ENST00000405925 IL32P24001 234 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms