RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NRBF2Q96F24 287 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 MEGF10Q96KG7 1140 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 ALPK1Q96QP1 1244 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 TUBA1CQ9BQE3 449 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 SRXN1Q9BYN0 137 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 KRTAP4-8Q9BYQ9 185 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 KLHL4Q9C0H6 718 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CALHM2Q9HA72 323 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 S100A14Q9HCY8 104 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 C20orf141Q9NUB4 165 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 ZNF229Q9UJW7 825 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 TESMINQ9Y4I5 508 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 FLNAP21333 2647 aaKnown RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 LOC102725191A0A1B0GVB3 256 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 MBD3L4A6NDZ8 208 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 MBD3L3A6NE82 208 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 MBD3L5A6NJ08 208 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 CLCA1A8K7I4 914 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SULT2B1O00204 365 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 EIF1AYO14602 144 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 TNFSF11O14788 317 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SMAD9O15198 467 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 EIF1BO60739 113 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 TIPRLO75663 272 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 IGFBP2P18065 325 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SSTR2P30874 369 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 DNAJA1P31689 397 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 SFTPDP35247 375 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 ERFP50548 548 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SLC16A1P53985 500 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 RPS3AP61247 264 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 RPS4XP62701 263 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 SLC35A1P78382 337 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SPIBQ01892 262 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 PDK3Q15120 406 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 POU4F3Q15319 338 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SF3B4Q15427 424 aaKnown RBP eCLIP8.18□□□□□ -1.15e-6■■■■■ 28.2
VPS53-203ENST00000401468 MICAQ29983 383 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 EXOC3L2Q2M3D2 409 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 NSUN5P2Q63ZY6 315 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 HBMQ6B0K9 141 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 POMZP3Q6PJE2 187 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 TBPL2Q6SJ96 375 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 PAQR6Q6TCH4 344 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 CD300LDQ6UXZ3 194 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 NHLRC1Q6VVB1 395 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 TMEM179BQ7Z7N9 219 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 GCNT2Q8N0V5 402 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 SCAIQ8N9R8 606 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 C9orf106Q8NAJ2 232 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 OR4K5Q8NGD3 323 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 PFN4Q8NHR9 129 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 MBD3L2Q8NHZ7 208 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 RNF128Q8TEB7 428 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 ASB5Q8WWX0 329 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 LRTOMTQ8WZ04 291 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 CENPNQ96H22 339 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 MOGAT1Q96PD6 335 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 OR5B2Q96R09 309 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 DGCR6LQ9BY27 220 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 TMEM185BQ9H7F4 350 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 REEP1Q9H902 201 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 FKRPQ9H9S5 495 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 RNF122Q9H9V4 155 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 MCCC2Q9HCC0 563 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 GP6Q9HCN6 339 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 TIGARQ9NQ88 270 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 MRPL39Q9NYK5 338 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 ING1Q9UK53 422 aaPredicted RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 TMEM5Q9Y2B1 443 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 MED31Q9Y3C7 131 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 CORINQ9Y5Q5 1042 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 HEATR1Q9H583 2144 aaKnown RBP8.18□□□□□ -1.1
VPS53-203ENST00000401468 ARID1AO14497 2285 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 ROS1P08922 2347 aa8.18□□□□□ -1.1
VPS53-203ENST00000401468 VPS13CQ709C8 3753 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 IGKV3D-15A0A087WSY6 115 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 A0A1W2PNV4 684 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 AQP7P3A6NL99 342 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZNF716A6NP11 495 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 EEF1E1-BLOC1S5C9J1V9 151 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 H0Y3Z8 333 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 TNFRSF11BO00300 401 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 CDC42EP2O14613 210 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 EEF1E1O43324 174 aaKnown RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 PIP5K1CO60331 668 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 CYTIPO60759 359 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 OR7A10O76100 309 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 AHSA1O95433 338 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 MAKP20794 623 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 FPR1P21462 350 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 CBLP22681 906 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 FPR3P25089 353 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 TIMP3P35625 211 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 RPS5P46782 204 aaKnown RBP8.17□□□□□ -1.1
VPS53-203ENST00000401468 GSSP48637 474 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 SLC9A3P48764 834 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 CARD18P57730 90 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 ZP4Q12836 540 aa8.17□□□□□ -1.1
VPS53-203ENST00000401468 FOXF2Q12947 444 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms