RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 STAB1Q9NY15 2570 aa9.17□□□□□ -0.94
NEDD8-202ENST00000396828 A0A087WZY1 265 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 A0A1W2PRQ8 180 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 C7orf72A4D263 438 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 TRAPPC13A5PLN9 417 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 SAC3D1A6NKF1 404 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CPSF4LA6NMK7 179 aaKnown RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 FAM171A2A8MVW0 826 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 NUDT14O95848 222 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 FCGR2AP12318 317 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 PRG2P13727 222 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 PAX1P15863 534 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 PGCP20142 388 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 EDNRAP25101 427 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 PEX2P28328 305 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 RYKP34925 604 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 VHLP40337 213 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ACAA2P42765 397 aaKnown RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 P2RX1P51575 399 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 SUMO3P55854 103 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CTBP2P56545 445 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 HOXC5Q00444 222 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF117Q03924 483 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 EPS8Q12929 822 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 FOXF1Q12946 379 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 TNK1Q13470 666 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 DGCR6Q14129 220 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 TRAM2Q15035 370 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 OR1Q1Q15612 314 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 LRRC36Q1X8D7 754 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 FGD3Q5JSP0 725 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 OGFRL1Q5TC84 451 aaPredicted RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 LPCAT4Q643R3 524 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 HBMQ6B0K9 141 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 SHQ1Q6PI26 577 aaKnown RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ZBTB49Q6ZSB9 765 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ESPNLQ6ZVH7 1005 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 TUSC5Q8IXB3 177 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 OFCC1Q8IZS5 231 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CADM2Q8N3J6 435 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 LSMEM1Q8N8F7 131 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 OR52J3Q8NH60 311 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 OR5W2Q8NH69 310 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF563Q8TA94 476 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 AKAP1Q92667 903 aaKnown RBP eCLIP9.16□□□□□ -0.942e-7■■□□□ 11.6
NEDD8-202ENST00000396828 ZBTB8AQ96BR9 441 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 S100PBPQ96BU1 408 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 WFDC6Q9BQY6 131 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ANKRD19PQ9H560 264 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 NTN4Q9HB63 628 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CTPS2Q9NRF8 586 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 ACER3Q9NUN7 267 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 RHCGQ9UBD6 479 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 MCTS1Q9ULC4 181 aaKnown RBP9.16□□□□□ -0.94
NEDD8-202ENST00000396828 A4GNTQ9UNA3 340 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 LAMP3Q9UQV4 416 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 LYVE1Q9Y5Y7 322 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CADP27708 2225 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 RTTNQ86VV8 2226 aa9.16□□□□□ -0.94
NEDD8-202ENST00000396828 CR1P17927 2039 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 IGHV3-15A0A0B4J1V0 119 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 FAAHO00519 579 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 HS3ST1O14792 307 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 FFAR1O14842 300 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 TPST2O60704 377 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 BCAS1O75363 584 aaPredicted RBP9.15□□□□□ -0.94
NEDD8-202ENST00000396828 SYNGR4O95473 234 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 SOD3P08294 240 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 PSMB1P20618 241 aaKnown RBP9.15□□□□□ -0.94
NEDD8-202ENST00000396828 HTR2AP28223 471 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 IDH2P48735 452 aaKnown RBP9.15□□□□□ -0.94
NEDD8-202ENST00000396828 HMGA2P52926 109 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 ATP5J2P56134 94 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 PLAURQ03405 335 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF239Q16600 458 aaKnown RBP9.15□□□□□ -0.94
NEDD8-202ENST00000396828 MICAQ29983 383 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 WBP2NLQ6ICG8 309 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 ULK3Q6PHR2 472 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 SEZ6L2Q6UXD5 910 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 TFAP2EQ6VUC0 442 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 BEND4Q6ZU67 534 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 RRM2BQ7LG56 351 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 STK32CQ86UX6 486 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 GABRG1Q8N1C3 465 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 LINC00471Q8N535 108 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 PACRGLQ8N7B6 248 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 ZNF611Q8N823 705 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 RNF217Q8TC41 542 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 RNF128Q8TEB7 428 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 GIPC3Q8TF64 312 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 TMEM171Q8WVE6 324 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 DNAJA4Q8WW22 397 aaPredicted RBP9.15□□□□□ -0.94
NEDD8-202ENST00000396828 NRG4Q8WWG1 115 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 TMEM234Q8WY98 164 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 SLC38A4Q969I6 547 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 SLC41A3Q96GZ6 507 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 DHRS1Q96LJ7 313 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 KLHL15Q96M94 604 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 PRR14Q9BWN1 585 aa9.15□□□□□ -0.94
NEDD8-202ENST00000396828 COQ10BQ9H8M1 238 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms