RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SIX1Q15475 284 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SCD5Q86SK9 330 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 OR6V1Q8N148 313 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GGHQ92820 318 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 NOX4Q9NPH5 578 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TREX1Q9NSU2 369 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SPHK1Q9NYA1 384 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 NPAP1Q9NZP6 1156 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 IGKV6D-21A0A0A0MT36 114 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 A0A1W2PQ09 198 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 H0YGG7 62 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM189-UBE2V1I3L0A0 370 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 NAGAP17050 411 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TMEM11P17152 192 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GLYR1Q49A26 553 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 Q6ZTK2 550 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 LRRTM3Q86VH5 581 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TP53INP2Q8IXH6 220 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC22A24Q8N4F4 322 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF480Q8WV37 535 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZFPM2Q8WW38 1151 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 HSFX1Q9UBD0 423 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 PRSS21Q9Y6M0 314 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 APOA2P02652 100 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 EDN3P14138 238 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GLB1P16278 677 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 F2RP25116 425 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 IL34Q6ZMJ4 242 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 INTS12Q96CB8 462 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 CALHM2Q9HA72 323 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 CXXC1Q9P0U4 656 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 PTAFRP25105 342 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GGTA1PQ4G0N0 100 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF789Q5FWF6 425 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 CPEB3Q8NE35 698 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SORT1Q99523 831 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GON7Q9BXV9 100 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC6A17Q9H1V8 727 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TCRBV3S1A0A5B6 114 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ELK1P19419 428 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 TAZQ16635 292 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC39A11Q8N1S5 342 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 DCBLD2Q96PD2 775 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 GALNT9Q9HCQ5 603 aa11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.88□□□□□ -0.51
CCDC88C-204ENST00000389857 A0A0B4J2A0 478 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SERINC4A6NH21 518 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SELEP16581 610 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 OMGP23515 440 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 PSMB3P49720 205 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 RAB13P51153 203 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 RPL11P62913 178 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 MORN1Q5T089 497 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 TANGO2Q6ICL3 276 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 FGF13Q92913 245 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 PDLIM5Q96HC4 596 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ALG12Q9BV10 488 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 TPPP3Q9BW30 176 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SHPKQ9UHJ6 478 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 NALCNQ8IZF0 1738 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 UTS2O95399 124 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 PVRP15151 417 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 TNFSF8P32971 234 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 GRB2P62993 217 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 PRDX1Q06830 199 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 C1orf220Q5T0J3 134 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 HBMQ6B0K9 141 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SLC46A3Q7Z3Q1 461 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 BAGE3Q86Y29 109 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 BAGE2Q86Y30 109 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 DNAJC5GQ8N7S2 189 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 LINC01599Q8WXQ3 324 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 NUMA1Q14980 2115 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF732B4DXR9 585 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SSTR2P30874 369 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 OR1D4P47884 311 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 SUB1P53999 127 aaKnown RBP eCLIP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 MFAP5Q13361 173 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 HES1Q14469 280 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 EBPQ15125 230 aaKnown RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 WDR88Q6ZMY6 472 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 METTL4Q8N3J2 472 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 NKAIN3Q8N8D7 197 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 CORO2AQ92828 525 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 TM7SF3Q9NS93 570 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 J3KTA2 159 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 C1SP09871 688 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 PSMB5P28074 263 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 GABRB3P28472 473 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 BLVRBP30043 206 aaPredicted RBP11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 HBA1P69905 142 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 HAPLN2Q9GZV7 340 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 CRYM-AS1A6NIL9 109 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ABHD16AO95870 558 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 GPLD1P80108 840 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ZNF252P-AS1Q0IIN9 211 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ESPNLQ6ZVH7 1005 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 EGFL6Q8IUX8 553 aa11.87□□□□□ -0.51
CCDC88C-204ENST00000389857 ANKLE1Q8NAG6 615 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms